Wall clock time and date at job start Mon Mar 30 2020 03:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 110.45763 * 2 1 4 4 C 1.34226 * 117.00071 * 300.70433 * 3 2 1 5 5 O 1.20826 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00214 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47287 * 180.02562 * 6 4 3 8 8 C 1.76205 * 100.00224 * 179.97438 * 7 6 4 9 9 H 1.07997 * 119.99580 * 359.97438 * 8 7 6 10 10 C 1.38793 * 120.00358 * 179.97438 * 8 7 6 11 11 N 1.31631 * 120.00221 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 119.99725 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.46851 * 90.00243 * 12 10 8 14 14 H 1.48496 * 109.46824 * 209.99961 * 12 10 8 15 15 H 1.48497 * 109.47353 * 330.00124 * 12 10 8 16 16 C 1.54505 * 110.51528 * 122.60717 * 2 1 3 17 17 C 1.54478 * 104.06471 * 118.64285 * 16 2 1 18 18 O 1.44420 * 104.80211 * 23.98138 * 17 16 2 19 19 C 1.44419 * 105.27613 * 319.48827 * 18 17 16 20 20 H 1.09002 * 109.47153 * 297.39284 * 1 2 3 21 21 H 1.09001 * 109.46832 * 177.39475 * 1 2 3 22 22 H 1.09004 * 109.47261 * 57.39456 * 1 2 3 23 23 H 1.09000 * 109.47254 * 299.99713 * 6 4 3 24 24 H 1.08994 * 109.47572 * 59.99672 * 6 4 3 25 25 H 0.97002 * 119.99694 * 180.02562 * 11 10 8 26 26 H 1.09001 * 110.51174 * 237.29294 * 16 2 1 27 27 H 1.08999 * 110.50990 * 359.85953 * 16 2 1 28 28 H 1.09000 * 110.37118 * 142.81040 * 17 16 2 29 29 H 1.08993 * 110.37334 * 265.14921 * 17 16 2 30 30 H 1.09004 * 110.37126 * 281.68190 * 19 18 17 31 31 H 1.09008 * 110.37436 * 159.34713 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0375 1.3604 0.0000 4 6 1.6783 2.1448 -1.0283 5 8 0.9639 1.7090 -1.8998 6 6 2.1670 3.5687 -1.0964 7 16 1.5153 4.3596 -2.5884 8 6 2.2223 5.9646 -2.4177 9 1 2.8467 6.1917 -1.5664 10 6 1.9767 6.9368 -3.3773 11 7 2.5044 8.1359 -3.2496 12 14 0.8970 6.5435 -4.8503 13 1 -0.5171 6.8598 -4.5259 14 1 1.3318 7.3572 -6.0139 15 1 1.0182 5.1011 -5.1819 16 6 2.0714 -0.7798 1.2190 17 6 2.8757 -1.9414 0.5944 18 8 3.2398 -1.4722 -0.7220 19 6 2.0713 -0.7827 -1.2168 20 1 -0.3633 0.4728 0.9124 21 1 -0.3633 -1.0266 -0.0467 22 1 -0.3634 0.5538 -0.8657 23 1 1.8231 4.1134 -0.2172 24 1 3.2565 3.5780 -1.1263 25 1 2.3324 8.8154 -3.9201 26 1 2.7220 -0.1447 1.8204 27 1 1.2491 -1.1632 1.8230 28 1 3.7689 -2.1451 1.1851 29 1 2.2564 -2.8353 0.5209 30 1 1.3285 -1.4989 -1.5682 31 1 2.3464 -0.0964 -2.0178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802903310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:49 Heat of formation + Delta-G solvation = -131.515533 kcal Electronic energy + Delta-G solvation = -15929.267946 eV Core-core repulsion = 13109.370148 eV Total energy + Delta-G solvation = -2819.897799 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.94457 -38.86977 -36.11660 -32.95302 -32.50096 -30.13901 -29.40803 -26.54207 -25.69496 -23.55959 -21.84086 -19.78958 -17.87550 -17.36110 -16.75427 -16.38380 -15.68708 -15.48689 -15.08151 -14.76234 -14.15807 -13.46570 -13.37647 -13.12383 -12.92163 -12.81358 -12.28730 -12.02018 -11.79628 -11.69610 -11.34251 -11.06467 -10.96456 -10.74405 -10.46747 -10.00235 -9.91196 -9.84576 -9.06482 -8.63168 -7.03248 -6.34302 -4.08681 2.37681 2.47479 3.06730 3.28201 3.44351 3.50182 3.71928 4.15004 4.26909 4.48205 4.57735 4.63747 4.78578 4.94907 4.99419 5.04550 5.32925 5.37959 5.39227 5.51889 5.58651 5.64278 5.70182 5.81678 5.94537 6.11288 6.43423 6.66313 7.88561 8.02306 8.37410 9.10737 10.74813 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.052083 B = 0.005117 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.474062 B = 5470.492548 C = 5584.336018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 O -0.343 6.343 4 C 0.480 3.520 5 O -0.487 6.487 6 C -0.102 4.102 7 S -0.138 6.138 8 C -0.523 4.523 9 H 0.091 0.909 10 C 0.098 3.902 11 N -0.877 5.877 12 Si 0.856 3.144 13 H -0.266 1.266 14 H -0.273 1.273 15 H -0.236 1.236 16 C -0.145 4.145 17 C 0.044 3.956 18 O -0.370 6.370 19 C 0.031 3.969 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.272 0.728 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -18.038 8.492 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.053 3.947 3 O -0.262 6.262 4 C 0.322 3.678 5 O -0.374 6.374 6 C -0.249 4.249 7 S 0.088 5.912 8 C -0.670 4.670 9 H 0.109 0.891 10 C -0.111 4.111 11 N -0.513 5.513 12 Si 0.681 3.319 13 H -0.191 1.191 14 H -0.198 1.198 15 H -0.160 1.160 16 C -0.183 4.183 17 C -0.033 4.033 18 O -0.288 6.288 19 C -0.046 4.046 20 H 0.086 0.914 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.939 -18.463 7.244 20.050 hybrid contribution 0.132 0.654 0.442 0.800 sum -2.807 -17.809 7.685 19.598 Atomic orbital electron populations 1.22437 0.92682 1.03622 1.04798 1.23477 0.94890 0.80074 0.96303 1.86615 1.69156 1.23366 1.47025 1.23226 0.77613 0.88109 0.78839 1.90605 1.34039 1.74509 1.38223 1.23039 1.05653 0.90373 1.05883 1.84759 1.67798 1.12886 1.25767 1.22267 1.36620 0.94260 1.13897 0.89066 1.24690 0.94923 0.93925 0.97587 1.69933 1.42809 1.03061 1.35519 0.86749 0.81340 0.81328 0.82499 1.19141 1.19777 1.15961 1.23082 1.01353 0.96914 0.96922 1.23452 0.99675 0.95690 0.84466 1.89188 1.35220 1.73722 1.30717 1.24029 0.88389 0.95635 0.96534 0.91426 0.90922 0.89032 0.87252 0.87145 0.91806 0.88737 0.88878 0.88536 0.91966 0.90595 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.21 37.16 0.31 -1.73 16 2 C 0.09 1.14 1.09 -89.05 -0.10 1.04 16 3 O -0.34 -5.35 9.89 -39.25 -0.39 -5.74 16 4 C 0.48 8.63 7.07 36.00 0.25 8.89 16 5 O -0.49 -9.51 12.07 -18.75 -0.23 -9.73 16 6 C -0.10 -1.98 6.27 36.00 0.23 -1.76 16 7 S -0.14 -3.40 18.55 -107.50 -1.99 -5.39 16 8 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 9 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 10 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 11 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 12 Si 0.86 21.29 27.74 -169.99 -4.72 16.58 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.24 -5.82 6.74 56.52 0.38 -5.43 16 16 C -0.15 -1.36 6.55 -25.17 -0.16 -1.53 16 17 C 0.04 0.41 7.63 37.93 0.29 0.69 16 18 O -0.37 -4.98 11.65 -35.23 -0.41 -5.39 16 19 C 0.03 0.41 6.38 37.93 0.24 0.65 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 22 H 0.09 1.28 5.86 -51.93 -0.30 0.98 16 23 H 0.11 2.00 8.14 -51.91 -0.42 1.57 16 24 H 0.11 2.05 8.14 -51.92 -0.42 1.63 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.09 0.90 8.00 -51.93 -0.42 0.49 16 27 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.86 7.83 -51.93 -0.41 0.46 16 31 H 0.11 1.66 6.49 -51.92 -0.34 1.32 16 LS Contribution 274.61 15.07 4.14 4.14 Total: -1.00 -31.63 274.61 -5.53 -37.15 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.98 Total: -0.73 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 1.27 Total: -5.52 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.78 Total: -25.36 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -1.03 Total: -20.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.72 Total: 16.58 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.63 -5.53 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802903310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.361 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds