Wall clock time and date at job start Mon Mar 30 2020 03:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 110.45763 * 2 1 4 4 C 1.34226 * 117.00071 * 300.70433 * 3 2 1 5 5 O 1.20826 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00214 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47287 * 180.02562 * 6 4 3 8 8 C 1.76205 * 100.00224 * 179.97438 * 7 6 4 9 9 H 1.07997 * 119.99580 * 359.97438 * 8 7 6 10 10 C 1.38793 * 120.00358 * 179.97438 * 8 7 6 11 11 N 1.31631 * 120.00221 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 119.99725 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.46851 * 90.00243 * 12 10 8 14 14 H 1.48496 * 109.46824 * 209.99961 * 12 10 8 15 15 H 1.48497 * 109.47353 * 330.00124 * 12 10 8 16 16 C 1.54505 * 110.51528 * 122.60717 * 2 1 3 17 17 C 1.54478 * 104.06471 * 118.64285 * 16 2 1 18 18 O 1.44420 * 104.80211 * 23.98138 * 17 16 2 19 19 C 1.44419 * 105.27613 * 319.48827 * 18 17 16 20 20 H 1.09002 * 109.47153 * 297.39284 * 1 2 3 21 21 H 1.09001 * 109.46832 * 177.39475 * 1 2 3 22 22 H 1.09004 * 109.47261 * 57.39456 * 1 2 3 23 23 H 1.09000 * 109.47254 * 299.99713 * 6 4 3 24 24 H 1.08994 * 109.47572 * 59.99672 * 6 4 3 25 25 H 0.97002 * 119.99694 * 180.02562 * 11 10 8 26 26 H 1.09001 * 110.51174 * 237.29294 * 16 2 1 27 27 H 1.08999 * 110.50990 * 359.85953 * 16 2 1 28 28 H 1.09000 * 110.37118 * 142.81040 * 17 16 2 29 29 H 1.08993 * 110.37334 * 265.14921 * 17 16 2 30 30 H 1.09004 * 110.37126 * 281.68190 * 19 18 17 31 31 H 1.09008 * 110.37436 * 159.34713 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0375 1.3604 0.0000 4 6 1.6783 2.1448 -1.0283 5 8 0.9639 1.7090 -1.8998 6 6 2.1670 3.5687 -1.0964 7 16 1.5153 4.3596 -2.5884 8 6 2.2223 5.9646 -2.4177 9 1 2.8467 6.1917 -1.5664 10 6 1.9767 6.9368 -3.3773 11 7 2.5044 8.1359 -3.2496 12 14 0.8970 6.5435 -4.8503 13 1 -0.5171 6.8598 -4.5259 14 1 1.3318 7.3572 -6.0139 15 1 1.0182 5.1011 -5.1819 16 6 2.0714 -0.7798 1.2190 17 6 2.8757 -1.9414 0.5944 18 8 3.2398 -1.4722 -0.7220 19 6 2.0713 -0.7827 -1.2168 20 1 -0.3633 0.4728 0.9124 21 1 -0.3633 -1.0266 -0.0467 22 1 -0.3634 0.5538 -0.8657 23 1 1.8231 4.1134 -0.2172 24 1 3.2565 3.5780 -1.1263 25 1 2.3324 8.8154 -3.9201 26 1 2.7220 -0.1447 1.8204 27 1 1.2491 -1.1632 1.8230 28 1 3.7689 -2.1451 1.1851 29 1 2.2564 -2.8353 0.5209 30 1 1.3285 -1.4989 -1.5682 31 1 2.3464 -0.0964 -2.0178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802903310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:49 Heat of formation + Delta-G solvation = -152.599783 kcal Electronic energy + Delta-G solvation = -15930.182228 eV Core-core repulsion = 13109.370148 eV Total energy + Delta-G solvation = -2820.812081 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.13491 -39.95733 -37.39667 -34.70358 -33.95600 -31.36835 -30.51688 -27.90877 -27.47082 -24.55767 -22.89031 -21.00056 -19.86923 -18.51063 -17.99827 -17.60147 -17.14334 -16.72522 -16.55252 -16.16867 -15.68111 -14.94885 -14.65788 -14.47675 -14.23018 -13.80933 -13.46100 -13.35181 -13.11102 -13.00810 -12.76511 -12.73877 -12.54294 -11.90709 -11.82203 -11.56592 -11.26343 -11.19272 -10.81224 -10.64767 -9.07357 -8.53652 -6.27356 0.76089 1.05179 1.31155 1.35707 1.48866 1.82075 2.22762 2.62571 2.84602 2.86543 3.25900 3.55203 3.57806 3.79655 4.07033 4.09935 4.20177 4.36228 4.40006 4.55084 4.62299 4.70262 4.77195 4.91118 4.95169 5.18156 5.29172 5.68421 5.71232 6.10063 6.64992 6.90192 8.58903 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.052083 B = 0.005117 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.474062 B = 5470.492548 C = 5584.336018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 O -0.343 6.343 4 C 0.489 3.511 5 O -0.505 6.505 6 C -0.094 4.094 7 S -0.155 6.155 8 C -0.535 4.535 9 H 0.063 0.937 10 C 0.048 3.952 11 N -0.915 5.915 12 Si 0.914 3.086 13 H -0.260 1.260 14 H -0.259 1.259 15 H -0.234 1.234 16 C -0.137 4.137 17 C 0.039 3.961 18 O -0.398 6.398 19 C 0.031 3.969 20 H 0.077 0.923 21 H 0.102 0.898 22 H 0.062 0.938 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.278 0.722 26 H 0.092 0.908 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -20.147 9.276 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.040 3.960 3 O -0.261 6.261 4 C 0.331 3.669 5 O -0.393 6.393 6 C -0.242 4.242 7 S 0.072 5.928 8 C -0.682 4.682 9 H 0.081 0.919 10 C -0.158 4.158 11 N -0.553 5.553 12 Si 0.736 3.264 13 H -0.184 1.184 14 H -0.183 1.183 15 H -0.158 1.158 16 C -0.175 4.175 17 C -0.037 4.037 18 O -0.317 6.317 19 C -0.046 4.046 20 H 0.096 0.904 21 H 0.121 0.879 22 H 0.081 0.919 23 H 0.141 0.859 24 H 0.137 0.863 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.144 0.856 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.819 -20.583 8.050 22.429 hybrid contribution 0.479 1.194 0.350 1.333 sum -3.340 -19.390 8.400 21.393 Atomic orbital electron populations 1.22413 0.91529 1.05224 1.03898 1.23958 0.95936 0.78324 0.97818 1.86582 1.69034 1.24908 1.45546 1.22739 0.77265 0.87651 0.79225 1.90608 1.34858 1.74785 1.39002 1.22968 1.06034 0.91618 1.03596 1.84548 1.68026 1.10941 1.29333 1.22430 1.36268 0.96469 1.13056 0.91877 1.25559 0.96151 0.93755 1.00294 1.70015 1.44251 1.04129 1.36893 0.85872 0.79761 0.81293 0.79477 1.18409 1.18283 1.15806 1.23163 1.02350 0.96302 0.95636 1.23761 1.00999 0.96292 0.82679 1.89157 1.35694 1.73980 1.32883 1.23979 0.88835 0.95743 0.96079 0.90424 0.87887 0.91940 0.85869 0.86255 0.91219 0.88945 0.85632 0.86921 0.89468 0.88712 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 8.21 71.98 0.59 -2.92 16 2 C 0.08 1.76 1.09 -9.78 -0.01 1.75 16 3 O -0.34 -10.25 9.89 -51.38 -0.51 -10.76 16 4 C 0.49 17.29 7.07 71.24 0.50 17.79 16 5 O -0.50 -19.54 12.07 21.96 0.27 -19.27 16 6 C -0.09 -3.64 6.27 71.24 0.45 -3.19 16 7 S -0.15 -7.61 18.55 -56.49 -1.05 -8.66 16 8 C -0.53 -30.80 10.04 67.95 0.68 -30.12 16 9 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 10 C 0.05 2.79 5.50 84.86 0.47 3.26 16 11 N -0.92 -55.28 13.97 21.65 0.30 -54.98 16 12 Si 0.91 43.86 27.74 68.60 1.90 45.76 16 13 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 15 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 16 C -0.14 -2.10 6.55 31.61 0.21 -1.89 16 17 C 0.04 0.58 7.63 72.48 0.55 1.14 16 18 O -0.40 -10.05 11.65 -148.98 -1.74 -11.79 16 19 C 0.03 0.77 6.38 72.49 0.46 1.24 16 20 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 22 H 0.06 1.67 5.86 -2.38 -0.01 1.66 16 23 H 0.12 4.43 8.14 -2.40 -0.02 4.41 16 24 H 0.12 4.41 8.14 -2.40 -0.02 4.39 16 25 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.09 1.48 8.00 -2.39 -0.02 1.46 16 27 H 0.13 1.13 7.73 -2.39 -0.02 1.11 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.97 7.83 -2.38 -0.02 1.95 16 31 H 0.07 2.34 6.49 -2.38 -0.02 2.32 16 Total: -1.00 -68.74 274.61 4.17 -64.57 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.09 Total: 8.08 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.90 Total: -12.95 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.30 Total: -54.98 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.98 Total: -41.82 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.76 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.05 Total: -8.66 kcal Total: -68.74 4.17 -64.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802903310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.028 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds