Wall clock time and date at job start Mon Mar 30 2020 03:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45205 * 110.45195 * 2 1 4 4 C 1.34235 * 116.99857 * 57.39260 * 3 2 1 5 5 O 1.20822 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99827 * 179.97438 * 4 3 2 7 7 S 1.80995 * 109.47163 * 180.02562 * 6 4 3 8 8 C 1.76199 * 99.99933 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00353 * 0.02562 * 8 7 6 10 10 C 1.38801 * 119.99705 * 179.97438 * 8 7 6 11 11 N 1.31625 * 120.00132 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99774 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00133 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00126 * 12 10 8 16 16 C 1.54503 * 110.51418 * 237.39881 * 2 1 3 17 17 C 1.54485 * 104.06125 * 241.21596 * 16 2 1 18 18 O 1.44422 * 104.79968 * 23.97306 * 17 16 2 19 19 C 1.44420 * 105.28162 * 319.49110 * 18 17 16 20 20 H 1.08998 * 109.47080 * 60.70463 * 1 2 3 21 21 H 1.09001 * 109.46756 * 180.70077 * 1 2 3 22 22 H 1.08994 * 109.47617 * 300.69878 * 1 2 3 23 23 H 1.08995 * 109.47138 * 60.00047 * 6 4 3 24 24 H 1.08998 * 109.47102 * 300.00294 * 6 4 3 25 25 H 0.97001 * 120.00200 * 359.97438 * 11 10 8 26 26 H 1.08997 * 110.51069 * 359.85832 * 16 2 1 27 27 H 1.08998 * 110.51720 * 122.43291 * 16 2 1 28 28 H 1.09001 * 110.37152 * 142.81037 * 17 16 2 29 29 H 1.09006 * 110.36554 * 265.03371 * 17 16 2 30 30 H 1.09002 * 110.37032 * 281.68619 * 19 18 17 31 31 H 1.09001 * 110.37464 * 159.34260 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0374 1.3605 0.0000 4 6 1.6464 2.1567 1.0075 5 8 0.9045 1.7311 1.8609 6 6 2.1329 3.5815 1.0743 7 16 1.4364 4.3890 2.5367 8 6 2.1495 5.9916 2.3701 9 1 2.8000 6.2092 1.5359 10 6 1.8744 6.9747 3.3106 11 7 1.0813 6.7097 4.3270 12 14 2.6310 8.6735 3.1344 13 1 2.1832 9.5339 4.2589 14 1 2.1992 9.2767 1.8479 15 1 4.1116 8.5607 3.1559 16 6 2.0715 -0.7797 -1.2191 17 6 2.8788 -1.9393 -0.5945 18 8 2.3120 -2.1164 0.7220 19 6 2.0743 -0.7806 1.2169 20 1 -0.3633 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3634 0.5246 0.8836 23 1 1.8166 4.1158 0.1785 24 1 3.2210 3.5913 1.1379 25 1 0.6887 5.8274 4.4187 26 1 1.2492 -1.1673 -1.8204 27 1 2.7181 -0.1432 -1.8231 28 1 2.7576 -2.8473 -1.1853 29 1 3.9332 -1.6720 -0.5228 30 1 3.0049 -0.3349 1.5682 31 1 1.3350 -0.7986 2.0177 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802903311.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:50 Heat of formation + Delta-G solvation = -137.706292 kcal Electronic energy + Delta-G solvation = -15880.319706 eV Core-core repulsion = 13060.153455 eV Total energy + Delta-G solvation = -2820.166250 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91621 -38.94447 -36.16223 -32.76738 -32.62128 -30.17714 -29.43902 -26.66619 -24.96573 -23.33128 -21.94905 -19.80127 -18.40814 -17.45898 -16.73321 -16.11593 -15.96597 -15.36021 -15.04396 -14.50564 -14.03164 -13.87096 -13.32014 -13.05121 -12.72782 -12.48841 -12.35897 -12.06307 -11.90846 -11.72722 -11.44132 -11.19246 -10.96459 -10.49393 -10.21370 -9.99342 -9.85995 -9.71076 -9.09311 -8.36889 -6.81264 -6.70515 -4.11153 2.41169 2.46797 3.21691 3.33367 3.34369 3.54158 3.80964 4.15746 4.17857 4.45300 4.52129 4.76326 4.92017 4.95850 5.14543 5.21865 5.36854 5.40322 5.50501 5.58155 5.60447 5.63170 5.67430 5.81084 5.90561 6.17094 6.45805 6.59818 7.84313 8.02552 8.41247 9.17421 10.73155 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.059809 B = 0.004661 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.041538 B = 6005.359412 C = 6132.668818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 O -0.348 6.348 4 C 0.479 3.521 5 O -0.482 6.482 6 C -0.108 4.108 7 S -0.112 6.112 8 C -0.609 4.609 9 H 0.069 0.931 10 C 0.038 3.962 11 N -0.881 5.881 12 Si 1.085 2.915 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.146 4.146 17 C 0.043 3.957 18 O -0.369 6.369 19 C 0.033 3.967 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.277 0.723 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -13.537 -11.412 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.053 3.947 3 O -0.267 6.267 4 C 0.320 3.680 5 O -0.368 6.368 6 C -0.256 4.256 7 S 0.114 5.886 8 C -0.757 4.757 9 H 0.087 0.913 10 C -0.173 4.173 11 N -0.515 5.515 12 Si 0.910 3.090 13 H -0.202 1.202 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.183 4.183 17 C -0.033 4.033 18 O -0.287 6.287 19 C -0.044 4.044 20 H 0.083 0.917 21 H 0.093 0.907 22 H 0.111 0.889 23 H 0.123 0.877 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.849 -12.837 -9.535 16.097 hybrid contribution 0.893 -0.760 -1.925 2.254 sum 2.742 -13.597 -11.460 17.992 Atomic orbital electron populations 1.22465 0.92542 1.03716 1.04713 1.23485 0.95441 0.79637 0.96185 1.86610 1.68125 1.23160 1.48810 1.23248 0.78124 0.88049 0.78567 1.90607 1.32897 1.74903 1.38362 1.23078 1.05380 0.90484 1.06695 1.84819 1.64751 1.11678 1.27329 1.23683 1.37860 0.96765 1.17375 0.91281 1.26085 0.95336 1.04140 0.91744 1.70817 1.27336 1.24799 1.28581 0.83315 0.75733 0.73487 0.76422 1.20213 1.21032 1.21021 1.23032 1.01544 0.96842 0.96894 1.23449 0.97150 0.98488 0.84259 1.89164 1.83071 1.25516 1.30979 1.23984 1.01342 0.82591 0.96453 0.91696 0.90694 0.88940 0.87693 0.87704 0.91036 0.89016 0.88698 0.88546 0.91769 0.91378 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 8.14 37.16 0.30 -1.97 16 2 C 0.09 1.18 1.09 -89.05 -0.10 1.08 16 3 O -0.35 -5.41 9.86 -39.27 -0.39 -5.80 16 4 C 0.48 8.82 7.36 36.01 0.27 9.08 16 5 O -0.48 -9.81 12.42 -18.75 -0.23 -10.04 16 6 C -0.11 -2.16 6.27 36.01 0.23 -1.93 16 7 S -0.11 -2.90 19.60 -107.50 -2.11 -5.01 16 8 C -0.61 -17.13 9.50 30.94 0.29 -16.84 16 9 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 10 C 0.04 1.07 5.49 -17.43 -0.10 0.98 16 11 N -0.88 -26.86 13.67 55.49 0.76 -26.10 16 12 Si 1.08 24.40 29.92 -169.99 -5.09 19.31 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 C -0.15 -1.42 6.55 -25.16 -0.16 -1.58 16 17 C 0.04 0.41 7.63 37.94 0.29 0.70 16 18 O -0.37 -4.76 11.65 -35.23 -0.41 -5.17 16 19 C 0.03 0.46 5.80 37.93 0.22 0.68 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.09 1.42 5.76 -51.93 -0.30 1.12 16 23 H 0.10 1.97 8.14 -51.92 -0.42 1.54 16 24 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 25 H 0.28 8.59 7.12 -40.82 -0.29 8.30 16 26 H 0.09 0.74 7.73 -51.93 -0.40 0.34 16 27 H 0.09 0.86 8.00 -51.93 -0.42 0.45 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.11 1.59 7.61 -51.93 -0.40 1.19 16 LS Contribution 277.25 15.07 4.18 4.18 Total: -1.00 -31.90 277.25 -6.01 -37.91 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -3.96 Total: 0.52 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 1.24 Total: -9.80 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.76 Total: -26.10 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.03 Total: -21.01 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.09 Total: 19.31 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.11 Total: -5.01 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.90 -6.01 -37.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802903311.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.793 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds