Wall clock time and date at job start Mon Mar 30 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39910 * 120.89888 * 36.15736 * 3 2 1 5 5 C 1.38421 * 119.18928 * 179.97438 * 4 3 2 6 6 N 1.31495 * 121.05212 * 359.97438 * 5 4 3 7 7 C 1.32742 * 121.98027 * 359.73136 * 6 5 4 8 8 C 1.48076 * 119.66127 * 180.29295 * 7 6 5 9 9 O 1.21428 * 120.00313 * 180.24585 * 8 7 6 10 10 O 1.34681 * 119.99692 * 0.23887 * 8 7 6 11 11 C 1.45202 * 116.99716 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47105 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47390 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99785 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00139 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47304 * 89.99748 * 17 15 13 19 19 H 1.48502 * 109.47320 * 210.00165 * 17 15 13 20 20 H 1.48502 * 109.46983 * 329.99932 * 17 15 13 21 21 C 1.39207 * 120.68473 * 0.53561 * 7 6 5 22 22 H 1.07996 * 120.40526 * 359.95541 * 4 3 2 23 23 H 1.08004 * 119.47645 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47429 * 299.99901 * 11 10 8 25 25 H 1.09002 * 109.46870 * 60.00509 * 11 10 8 26 26 H 1.09002 * 109.46774 * 300.00153 * 12 11 10 27 27 H 1.09000 * 109.46896 * 59.99461 * 12 11 10 28 28 H 0.96994 * 119.99849 * 179.97438 * 16 15 13 29 29 H 1.08002 * 120.56170 * 179.75845 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2869 -0.9683 -0.7083 5 6 4.6705 -0.9341 -0.6844 6 7 5.3144 -0.0077 -0.0089 7 6 4.6770 0.9357 0.6735 8 6 5.4538 1.9581 1.4111 9 8 4.8771 2.8213 2.0410 10 8 6.8001 1.9304 1.3834 11 6 7.4961 2.9633 2.1298 12 6 9.0065 2.7704 1.9804 13 6 9.7289 3.8419 2.7555 14 1 9.1669 4.5864 3.3000 15 6 11.1073 3.8726 2.7688 16 7 11.7916 2.9664 2.1055 17 14 12.0027 5.2013 3.7291 18 1 12.2473 4.7301 5.1159 19 1 13.3004 5.4983 3.0710 20 1 11.1722 6.4319 3.7637 21 6 3.2858 0.9711 0.7070 22 1 2.7687 -1.7339 -1.2667 23 1 5.2301 -1.6801 -1.2292 24 1 7.2152 3.9429 1.7430 25 1 7.2234 2.8966 3.1831 26 1 9.2877 1.7908 2.3669 27 1 9.2788 2.8372 0.9271 28 1 12.7613 2.9882 2.1145 29 1 2.7692 1.7373 1.2661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803845449.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:42 Heat of formation + Delta-G solvation = -22.898304 kcal Electronic energy + Delta-G solvation = -15897.119596 eV Core-core repulsion = 12978.780593 eV Total energy + Delta-G solvation = -2918.339003 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02092 -39.55369 -37.14990 -36.24955 -33.45972 -33.19074 -32.05745 -30.23943 -26.08341 -25.24343 -24.30966 -22.06737 -20.86576 -19.46171 -17.70505 -16.57097 -16.43166 -16.31772 -16.15280 -15.83004 -14.85408 -14.82184 -14.50134 -13.77918 -13.58276 -13.47246 -13.09038 -13.00800 -12.36217 -12.28609 -11.27263 -11.06521 -10.83865 -10.77306 -10.56733 -10.35488 -10.06094 -9.78989 -9.64210 -9.64090 -9.29923 -8.43595 -6.09579 -4.14134 -0.01944 0.31208 2.05788 2.19162 2.75126 2.75658 3.21795 3.29211 3.35389 3.39195 3.50007 3.92271 4.23713 4.37281 4.41077 4.52215 4.93602 5.14453 5.23977 5.26974 5.40695 5.93073 6.02374 6.05901 6.61087 6.78943 6.88544 7.29713 7.56160 7.63613 7.85081 8.06283 8.23816 8.91419 9.50160 11.01792 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.057665 B = 0.003695 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.449597 B = 7575.033244 C = 8040.025081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.254 3.746 3 C 0.012 3.988 4 C -0.100 4.100 5 C 0.106 3.894 6 N -0.410 5.410 7 C 0.110 3.890 8 C 0.514 3.486 9 O -0.503 6.503 10 O -0.328 6.328 11 C 0.072 3.928 12 C 0.025 3.975 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.067 4.067 22 H 0.154 0.846 23 H 0.179 0.821 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.284 -8.734 -6.263 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.062 4.062 3 C 0.000 4.000 4 C -0.123 4.123 5 C -0.054 4.054 6 N -0.121 5.121 7 C -0.027 4.027 8 C 0.356 3.644 9 O -0.392 6.392 10 O -0.242 6.242 11 C 0.000 4.000 12 C -0.012 4.012 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.089 4.089 22 H 0.172 0.828 23 H 0.196 0.804 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.044 -8.463 -6.070 19.128 hybrid contribution 0.072 0.752 0.558 0.939 sum -15.973 -7.711 -5.512 18.573 Atomic orbital electron populations 1.81304 1.11621 1.06807 1.07046 1.25259 0.92116 0.94400 0.94418 1.16039 0.85221 0.97872 1.00821 1.22581 0.95901 0.97242 0.96576 1.23013 0.90785 0.96057 0.95555 1.67719 1.40945 1.00467 1.02983 1.20212 0.89769 0.94792 0.97896 1.20572 0.82995 0.82539 0.78333 1.90841 1.71901 1.35968 1.40503 1.86705 1.17142 1.53604 1.66725 1.23798 0.94954 0.87321 0.93953 1.19174 0.84746 0.98508 0.98791 1.20972 0.91389 1.12785 1.31400 0.92237 1.24979 0.97506 0.96139 0.95506 1.69975 1.07014 1.34343 1.41351 0.86472 0.79066 0.81847 0.79915 1.20501 1.21063 1.19742 1.22158 0.93525 0.97378 0.95885 0.82841 0.80404 0.91992 0.91990 0.95175 0.95164 0.92710 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.34 18.54 41.84 0.78 -3.57 15 2 C 0.25 2.25 15.40 -22.47 -0.35 1.90 15 3 C 0.01 0.09 5.75 -106.73 -0.61 -0.52 15 4 C -0.10 -0.57 9.86 -38.89 -0.38 -0.95 15 5 C 0.11 0.78 11.17 -17.63 -0.20 0.58 15 6 N -0.41 -5.02 10.09 -9.88 -0.10 -5.12 15 7 C 0.11 1.43 6.74 -83.08 -0.56 0.87 15 8 C 0.51 8.76 7.95 34.77 0.28 9.03 15 9 O -0.50 -9.25 16.11 -19.21 -0.31 -9.56 15 10 O -0.33 -6.52 10.03 -40.44 -0.41 -6.93 15 11 C 0.07 1.57 5.41 37.16 0.20 1.77 15 12 C 0.02 0.64 5.35 -27.88 -0.15 0.50 15 13 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 15 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 16 N -0.89 -26.11 13.29 55.43 0.74 -25.38 15 17 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 21 C -0.07 -0.66 9.38 -38.60 -0.36 -1.03 15 22 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 15 23 H 0.18 0.72 8.06 -52.48 -0.42 0.30 15 24 H 0.06 1.32 8.14 -51.93 -0.42 0.89 15 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 29 H 0.16 1.50 7.64 -52.49 -0.40 1.10 15 LS Contribution 282.87 15.07 4.26 4.26 Total: -1.00 -32.41 282.87 -5.09 -37.49 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: -2.48 Total: -6.18 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.55 Total: -1.20 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 1.41 Total: -34.07 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.72 Total: -16.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.41 -5.09 -37.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803845449.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.592 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds