Wall clock time and date at job start Mon Mar 30 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39910 * 120.89888 * 36.15736 * 3 2 1 5 5 C 1.38421 * 119.18928 * 179.97438 * 4 3 2 6 6 N 1.31495 * 121.05212 * 359.97438 * 5 4 3 7 7 C 1.32742 * 121.98027 * 359.73136 * 6 5 4 8 8 C 1.48076 * 119.66127 * 180.29295 * 7 6 5 9 9 O 1.21428 * 120.00313 * 180.24585 * 8 7 6 10 10 O 1.34681 * 119.99692 * 0.23887 * 8 7 6 11 11 C 1.45202 * 116.99716 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47105 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47390 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99785 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00139 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47304 * 89.99748 * 17 15 13 19 19 H 1.48502 * 109.47320 * 210.00165 * 17 15 13 20 20 H 1.48502 * 109.46983 * 329.99932 * 17 15 13 21 21 C 1.39207 * 120.68473 * 0.53561 * 7 6 5 22 22 H 1.07996 * 120.40526 * 359.95541 * 4 3 2 23 23 H 1.08004 * 119.47645 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47429 * 299.99901 * 11 10 8 25 25 H 1.09002 * 109.46870 * 60.00509 * 11 10 8 26 26 H 1.09002 * 109.46774 * 300.00153 * 12 11 10 27 27 H 1.09000 * 109.46896 * 59.99461 * 12 11 10 28 28 H 0.96994 * 119.99849 * 179.97438 * 16 15 13 29 29 H 1.08002 * 120.56170 * 179.75845 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2869 -0.9683 -0.7083 5 6 4.6705 -0.9341 -0.6844 6 7 5.3144 -0.0077 -0.0089 7 6 4.6770 0.9357 0.6735 8 6 5.4538 1.9581 1.4111 9 8 4.8771 2.8213 2.0410 10 8 6.8001 1.9304 1.3834 11 6 7.4961 2.9633 2.1298 12 6 9.0065 2.7704 1.9804 13 6 9.7289 3.8419 2.7555 14 1 9.1669 4.5864 3.3000 15 6 11.1073 3.8726 2.7688 16 7 11.7916 2.9664 2.1055 17 14 12.0027 5.2013 3.7291 18 1 12.2473 4.7301 5.1159 19 1 13.3004 5.4983 3.0710 20 1 11.1722 6.4319 3.7637 21 6 3.2858 0.9711 0.7070 22 1 2.7687 -1.7339 -1.2667 23 1 5.2301 -1.6801 -1.2292 24 1 7.2152 3.9429 1.7430 25 1 7.2234 2.8966 3.1831 26 1 9.2877 1.7908 2.3669 27 1 9.2788 2.8372 0.9271 28 1 12.7613 2.9882 2.1145 29 1 2.7692 1.7373 1.2661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803845449.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:42 Heat of formation + Delta-G solvation = -43.410374 kcal Electronic energy + Delta-G solvation = -15898.009066 eV Core-core repulsion = 12978.780593 eV Total energy + Delta-G solvation = -2919.228473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.98873 -40.77064 -37.93562 -37.75723 -35.43374 -34.05728 -32.92540 -32.15314 -27.51040 -26.38142 -25.46283 -23.30547 -22.60047 -20.56540 -18.90442 -18.26950 -17.61972 -17.49730 -17.17374 -17.07893 -16.48103 -15.73289 -15.50876 -15.04319 -14.55892 -14.36133 -14.28340 -14.27935 -14.19511 -13.15896 -13.13813 -12.92565 -12.60126 -12.57218 -12.07321 -11.61887 -11.47494 -11.40665 -11.09391 -10.79579 -10.58959 -10.46563 -8.24265 -6.37571 -0.77766 -0.42076 1.17894 1.27146 1.43365 1.45237 1.55368 1.62057 1.90317 2.40800 2.47029 2.70642 3.04329 3.10074 3.59718 3.63823 3.72453 4.17662 4.24424 4.27489 4.38301 4.56622 4.71485 4.78744 5.20786 5.34505 5.47604 5.49554 5.75172 6.08367 6.18901 6.42944 6.75320 6.78104 7.32029 8.88317 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.057665 B = 0.003695 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.449597 B = 7575.033244 C = 8040.025081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.281 3.719 3 C 0.012 3.988 4 C -0.057 4.057 5 C 0.111 3.889 6 N -0.448 5.448 7 C 0.080 3.920 8 C 0.511 3.489 9 O -0.525 6.525 10 O -0.343 6.343 11 C 0.087 3.913 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.066 0.934 15 C 0.006 3.994 16 N -0.926 5.926 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.263 1.263 21 C -0.057 4.057 22 H 0.202 0.798 23 H 0.216 0.784 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.267 0.733 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.298 -9.610 -6.888 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.035 4.035 3 C 0.001 3.999 4 C -0.079 4.079 5 C -0.050 4.050 6 N -0.159 5.159 7 C -0.055 4.055 8 C 0.356 3.644 9 O -0.415 6.415 10 O -0.258 6.258 11 C 0.014 3.986 12 C -0.006 4.006 13 C -0.588 4.588 14 H 0.085 0.915 15 C -0.193 4.193 16 N -0.565 5.565 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.079 4.079 22 H 0.219 0.781 23 H 0.233 0.767 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.086 -9.331 -6.687 20.584 hybrid contribution 0.300 0.864 0.637 1.115 sum -16.786 -8.466 -6.050 19.750 Atomic orbital electron populations 1.81349 1.12714 1.08068 1.08386 1.25160 0.91862 0.93236 0.93227 1.15980 0.84565 0.98125 1.01238 1.23088 0.95122 0.96082 0.93602 1.23693 0.91820 0.95172 0.94315 1.67589 1.42640 1.01555 1.04155 1.19628 0.90024 0.95453 1.00350 1.21322 0.81769 0.83248 0.78106 1.90808 1.71767 1.37218 1.41686 1.86676 1.19271 1.53004 1.66854 1.23294 0.92793 0.88048 0.94432 1.18970 0.87733 0.97004 0.96880 1.21380 0.92217 1.13396 1.31811 0.91540 1.25967 0.98401 0.98548 0.96396 1.70102 1.07512 1.36211 1.42668 0.85313 0.77669 0.78817 0.78425 1.19583 1.20442 1.18727 1.22061 0.92237 0.97845 0.95784 0.78126 0.76708 0.91737 0.91712 0.97536 0.97522 0.92370 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.72 18.54 19.00 0.35 -8.36 15 2 C 0.28 4.25 15.40 88.33 1.36 5.61 15 3 C 0.01 0.15 5.75 -21.23 -0.12 0.03 15 4 C -0.06 -0.38 9.86 22.72 0.22 -0.15 15 5 C 0.11 1.23 11.17 84.79 0.95 2.18 15 6 N -0.45 -10.42 10.09 -185.18 -1.87 -12.29 15 7 C 0.08 2.05 6.74 41.85 0.28 2.34 15 8 C 0.51 17.98 7.95 70.43 0.56 18.54 15 9 O -0.52 -19.87 16.11 20.07 0.32 -19.55 15 10 O -0.34 -14.23 10.03 -55.90 -0.56 -14.79 15 11 C 0.09 3.94 5.41 71.98 0.39 4.33 15 12 C 0.03 1.69 5.35 29.85 0.16 1.85 15 13 C -0.55 -31.19 9.11 25.60 0.23 -30.96 15 14 H 0.07 3.58 7.74 -2.91 -0.02 3.56 15 15 C 0.01 0.34 5.46 84.65 0.46 0.80 15 16 N -0.93 -55.46 13.29 21.45 0.28 -55.17 15 17 Si 0.97 43.50 29.54 68.60 2.03 45.53 15 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 21 C -0.06 -1.06 9.38 22.90 0.21 -0.84 15 22 H 0.20 -0.43 8.06 -2.91 -0.02 -0.46 15 23 H 0.22 0.71 8.06 -2.91 -0.02 0.69 15 24 H 0.06 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.06 2.84 8.14 -2.39 -0.02 2.82 15 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 15 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 15 29 H 0.16 2.94 7.64 -2.91 -0.02 2.92 15 Total: -1.00 -73.08 282.87 6.45 -66.63 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: 1.18 Total: -5.71 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 4.71 Total: 3.73 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -1.23 Total: -75.83 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.24 Total: -34.34 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -73.08 6.45 -66.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803845449.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.217 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds