Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48502 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47207 * 299.99802 * 3 2 1 6 6 H 1.48499 * 109.47116 * 60.00011 * 3 2 1 7 7 C 1.38795 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99677 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99868 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47023 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46819 * 179.97438 * 11 10 9 13 13 O 1.45205 * 109.46784 * 180.02562 * 12 11 10 14 14 C 1.34225 * 116.99775 * 180.02562 * 13 12 11 15 15 O 1.20828 * 120.00173 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.54036 * 113.81709 * 180.02562 * 16 14 13 18 18 O 1.44179 * 85.66382 * 136.73615 * 17 16 14 19 19 C 1.44442 * 93.22864 * 335.92808 * 18 17 16 20 20 H 0.96999 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46901 * 59.99688 * 10 9 7 22 22 H 1.08992 * 109.46927 * 299.99881 * 10 9 7 23 23 H 1.09000 * 109.46858 * 59.99695 * 11 10 9 24 24 H 1.09004 * 109.47069 * 300.00089 * 11 10 9 25 25 H 1.09003 * 109.46902 * 59.99920 * 12 11 10 26 26 H 1.08992 * 109.47129 * 299.99988 * 12 11 10 27 27 H 1.08992 * 113.00272 * 48.17069 * 16 14 13 28 28 H 1.09002 * 113.86404 * 250.95052 * 17 16 14 29 29 H 1.09002 * 113.86879 * 22.52496 * 17 16 14 30 30 H 1.09008 * 113.74590 * 269.91647 * 19 18 17 31 31 H 1.08995 * 114.06139 * 138.26913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9793 -5.3243 0.0001 12 6 3.1514 -6.3077 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5485 -8.6576 -0.0005 15 8 4.7282 -8.3967 -0.0010 16 6 3.0946 -10.0946 -0.0011 17 6 4.2510 -11.1121 -0.0004 18 8 3.4768 -11.8262 0.9842 19 6 2.7614 -10.6422 1.3996 20 1 -0.4850 0.8400 -0.0004 21 1 3.1245 -3.7313 0.8895 22 1 3.1244 -3.7313 -0.8905 23 1 1.3704 -5.4846 -0.8896 24 1 1.3709 -5.4840 0.8904 25 1 3.7606 -6.1474 0.8890 26 1 3.7593 -6.1478 -0.8909 27 1 2.3286 -10.2990 -0.7490 28 1 4.3679 -11.6475 -0.9427 29 1 5.1901 -10.7123 0.3822 30 1 3.2451 -10.0994 2.2118 31 1 1.6967 -10.8027 1.5685 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805535919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = -113.756247 kcal Electronic energy + Delta-G solvation = -14902.122575 eV Core-core repulsion = 12082.994876 eV Total energy + Delta-G solvation = -2819.127698 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.39912 -39.73076 -36.77636 -33.58499 -32.47333 -30.88059 -27.06184 -26.69638 -25.51515 -23.26948 -21.39735 -20.31297 -18.34541 -17.45472 -17.13455 -17.07018 -16.45151 -15.96925 -14.88533 -14.83481 -14.63752 -13.97060 -13.32884 -13.18689 -12.90502 -12.66878 -12.21283 -11.93018 -11.73211 -11.39387 -11.20200 -11.05151 -10.93657 -10.72975 -10.56211 -10.36737 -10.17689 -9.65523 -9.11305 -8.39033 -6.59955 -6.27824 -3.99094 1.87893 2.41733 3.11966 3.18553 3.19795 3.27666 3.50151 3.65480 4.16979 4.40693 4.61448 4.62084 4.89840 5.03875 5.05188 5.09062 5.11251 5.31787 5.37461 5.42456 5.49565 5.58204 5.71757 5.83433 6.09895 6.33902 6.39599 6.61585 7.52506 7.56574 8.32170 9.18792 10.80408 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.076686 B = 0.003246 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.037003 B = 8624.101300 C = 8859.495232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.071 3.929 13 O -0.351 6.351 14 C 0.464 3.536 15 O -0.506 6.506 16 C -0.160 4.160 17 C 0.058 3.942 18 O -0.376 6.376 19 C 0.059 3.941 20 H 0.267 0.733 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -18.885 0.280 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.004 4.004 13 O -0.268 6.268 14 C 0.306 3.694 15 O -0.394 6.394 16 C -0.179 4.179 17 C -0.019 4.019 18 O -0.295 6.295 19 C -0.018 4.018 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.157 0.843 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.235 -19.098 0.363 19.566 hybrid contribution 1.945 1.683 -0.150 2.576 sum 6.180 -17.416 0.213 18.481 Atomic orbital electron populations 1.70027 1.05934 1.27340 1.47168 1.25025 0.95106 0.99160 0.94499 0.86087 0.79647 0.81715 0.77922 1.19570 1.20524 1.20528 1.22735 0.94621 0.90640 1.58637 0.90783 1.84660 1.08750 0.99279 1.96882 1.23185 1.03480 0.96332 1.03357 1.21291 0.96397 0.91577 1.04358 1.23325 0.97872 0.76530 1.02673 1.86501 1.40233 1.17030 1.83005 1.23470 0.84796 0.88522 0.72621 1.90679 1.18588 1.84910 1.45237 1.24555 1.02247 0.88557 1.02573 1.23994 0.94535 0.89461 0.93871 1.89797 1.55871 1.27674 1.56116 1.23928 0.99720 0.84574 0.93588 0.92274 0.91723 0.91720 0.90316 0.90300 0.91066 0.91058 0.84332 0.87935 0.88345 0.89329 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.68 9.50 30.94 0.29 -14.39 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 11 C -0.10 -1.55 5.60 -26.73 -0.15 -1.70 16 12 C 0.07 0.98 5.47 37.16 0.20 1.19 16 13 O -0.35 -4.55 10.22 -39.25 -0.40 -4.95 16 14 C 0.46 5.47 7.50 36.00 0.27 5.74 16 15 O -0.51 -7.29 15.64 -18.75 -0.29 -7.58 16 16 C -0.16 -1.32 4.51 -90.69 -0.41 -1.72 16 17 C 0.06 0.46 8.56 37.61 0.32 0.79 16 18 O -0.38 -3.58 12.47 -35.23 -0.44 -4.02 16 19 C 0.06 0.45 8.78 37.61 0.33 0.78 16 20 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 22 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 26 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 27 H 0.14 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.85 7.40 -51.93 -0.38 0.47 16 30 H 0.09 0.66 8.09 -51.92 -0.42 0.24 16 31 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -32.36 289.81 -6.54 -38.89 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.15 Total: -3.14 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 0.98 Total: -9.45 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.73 Total: -24.95 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -1.13 Total: -16.54 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.36 -6.54 -38.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805535919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.862 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds