Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48502 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47207 * 299.99802 * 3 2 1 6 6 H 1.48499 * 109.47116 * 60.00011 * 3 2 1 7 7 C 1.38795 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99677 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99868 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47023 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46819 * 179.97438 * 11 10 9 13 13 O 1.45205 * 109.46784 * 180.02562 * 12 11 10 14 14 C 1.34225 * 116.99775 * 180.02562 * 13 12 11 15 15 O 1.20828 * 120.00173 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.54036 * 113.81709 * 180.02562 * 16 14 13 18 18 O 1.44179 * 85.66382 * 136.73615 * 17 16 14 19 19 C 1.44442 * 93.22864 * 335.92808 * 18 17 16 20 20 H 0.96999 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46901 * 59.99688 * 10 9 7 22 22 H 1.08992 * 109.46927 * 299.99881 * 10 9 7 23 23 H 1.09000 * 109.46858 * 59.99695 * 11 10 9 24 24 H 1.09004 * 109.47069 * 300.00089 * 11 10 9 25 25 H 1.09003 * 109.46902 * 59.99920 * 12 11 10 26 26 H 1.08992 * 109.47129 * 299.99988 * 12 11 10 27 27 H 1.08992 * 113.00272 * 48.17069 * 16 14 13 28 28 H 1.09002 * 113.86404 * 250.95052 * 17 16 14 29 29 H 1.09002 * 113.86879 * 22.52496 * 17 16 14 30 30 H 1.09008 * 113.74590 * 269.91647 * 19 18 17 31 31 H 1.08995 * 114.06139 * 138.26913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9793 -5.3243 0.0001 12 6 3.1514 -6.3077 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5485 -8.6576 -0.0005 15 8 4.7282 -8.3967 -0.0010 16 6 3.0946 -10.0946 -0.0011 17 6 4.2510 -11.1121 -0.0004 18 8 3.4768 -11.8262 0.9842 19 6 2.7614 -10.6422 1.3996 20 1 -0.4850 0.8400 -0.0004 21 1 3.1245 -3.7313 0.8895 22 1 3.1244 -3.7313 -0.8905 23 1 1.3704 -5.4846 -0.8896 24 1 1.3709 -5.4840 0.8904 25 1 3.7606 -6.1474 0.8890 26 1 3.7593 -6.1478 -0.8909 27 1 2.3286 -10.2990 -0.7490 28 1 4.3679 -11.6475 -0.9427 29 1 5.1901 -10.7123 0.3822 30 1 3.2451 -10.0994 2.2118 31 1 1.6967 -10.8027 1.5685 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805535919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = -134.502480 kcal Electronic energy + Delta-G solvation = -14903.022199 eV Core-core repulsion = 12082.994876 eV Total energy + Delta-G solvation = -2820.027323 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.20735 -40.58318 -37.83324 -34.93680 -34.59350 -31.62347 -28.23483 -27.63565 -27.41841 -24.20901 -22.71232 -21.09728 -19.62937 -19.11371 -18.10541 -17.91902 -17.23875 -16.90970 -16.72358 -16.28262 -15.88330 -15.36152 -14.70240 -14.22650 -13.86757 -13.83702 -13.74740 -13.15222 -12.97344 -12.71758 -12.61515 -12.45227 -12.41758 -12.29266 -11.67150 -11.55290 -11.36304 -11.16965 -10.82350 -10.37075 -8.69193 -8.39351 -6.15846 0.96510 1.26031 1.38195 1.41085 1.52025 1.82175 2.25923 2.50793 2.95422 3.00637 3.26798 3.56264 3.82560 3.95400 3.97814 4.04299 4.13463 4.30100 4.30668 4.49507 4.54608 4.66630 4.80937 4.89414 4.96435 4.99992 5.10388 5.37897 5.39414 6.16935 6.56289 7.03483 8.70237 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.076686 B = 0.003246 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.037003 B = 8624.101300 C = 8859.495232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.093 4.093 11 C -0.086 4.086 12 C 0.078 3.922 13 O -0.353 6.353 14 C 0.465 3.535 15 O -0.535 6.535 16 C -0.153 4.153 17 C 0.057 3.943 18 O -0.393 6.393 19 C 0.058 3.942 20 H 0.272 0.728 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -19.498 0.131 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.688 4.688 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.242 4.242 11 C -0.124 4.124 12 C 0.003 3.997 13 O -0.269 6.269 14 C 0.309 3.691 15 O -0.424 6.424 16 C -0.172 4.172 17 C -0.019 4.019 18 O -0.313 6.313 19 C -0.018 4.018 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.181 0.819 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.888 -19.730 0.216 20.328 hybrid contribution 1.757 1.761 -0.094 2.489 sum 6.645 -17.969 0.121 19.159 Atomic orbital electron populations 1.70149 1.07639 1.28577 1.47921 1.26058 0.96044 1.03098 0.93714 0.84960 0.78412 0.76656 0.78304 1.18714 1.19666 1.19677 1.23085 0.94830 0.91954 1.58930 0.90815 1.84626 1.13085 1.00837 1.97059 1.23079 1.00800 0.96627 1.03654 1.21107 0.97039 0.89756 1.04543 1.23056 0.96631 0.77013 1.02997 1.86498 1.40593 1.16676 1.83173 1.24192 0.84257 0.89331 0.71320 1.90672 1.19787 1.85357 1.46619 1.24746 1.03027 0.85634 1.03805 1.24099 0.93936 0.89427 0.94480 1.89789 1.56297 1.28570 1.56618 1.24105 1.00903 0.83749 0.93072 0.91884 0.91349 0.91365 0.90194 0.90128 0.90785 0.90805 0.81866 0.85704 0.89439 0.89545 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.04 13.22 21.65 0.29 -53.76 16 2 C 0.02 0.90 5.49 84.86 0.47 1.36 16 3 Si 0.99 43.48 29.55 68.60 2.03 45.50 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.78 9.50 67.95 0.65 -30.14 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.18 -9.60 21.44 -56.49 -1.21 -10.81 16 10 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 11 C -0.09 -2.62 5.60 30.60 0.17 -2.45 16 12 C 0.08 2.06 5.47 71.98 0.39 2.45 16 13 O -0.35 -8.50 10.22 -51.37 -0.53 -9.02 16 14 C 0.46 10.20 7.50 71.24 0.53 10.73 16 15 O -0.53 -14.83 15.64 21.96 0.34 -14.49 16 16 C -0.15 -2.17 4.51 -10.84 -0.05 -2.22 16 17 C 0.06 0.81 8.56 72.27 0.62 1.43 16 18 O -0.39 -6.76 12.47 -148.98 -1.86 -8.62 16 19 C 0.06 0.76 8.78 72.28 0.63 1.40 16 20 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 21 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 22 H 0.07 2.58 8.14 -2.40 -0.02 2.56 16 23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 26 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 27 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.43 7.40 -2.39 -0.02 1.42 16 30 H 0.09 1.16 8.09 -2.38 -0.02 1.14 16 31 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.26 289.81 4.00 -65.26 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.12 Total: 6.54 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 3.82 Total: -20.60 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.29 Total: -53.76 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -2.04 Total: -32.13 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -9.60 SS G_CDS: -1.21 Total: -10.81 kcal Total: -69.26 4.00 -65.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805535919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.246 kcal (2) G-P(sol) polarization free energy of solvation -69.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds