Wall clock time and date at job start Mon Mar 30 2020 03:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99874 * 2 1 4 4 H 1.09000 * 112.90798 * 18.74470 * 3 2 1 5 5 C 1.53780 * 113.61593 * 150.00337 * 3 2 1 6 6 C 1.53780 * 87.08078 * 139.98361 * 5 3 2 7 7 H 1.08993 * 113.61561 * 89.20238 * 6 5 3 8 8 O 1.45206 * 113.61136 * 220.01943 * 6 5 3 9 9 C 1.34224 * 117.00077 * 210.00027 * 8 6 5 10 10 O 1.20833 * 120.00103 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00302 * 180.02562 * 9 8 6 12 12 S 1.80999 * 109.47427 * 180.02562 * 11 9 8 13 13 C 1.76202 * 100.00120 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99931 * 0.02562 * 13 12 11 15 15 C 1.38794 * 119.99878 * 179.97438 * 13 12 11 16 16 N 1.31634 * 120.00193 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00246 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47035 * 89.99802 * 17 15 13 19 19 H 1.48502 * 109.47428 * 209.99683 * 17 15 13 20 20 H 1.48498 * 109.47233 * 329.99747 * 17 15 13 21 21 C 1.53777 * 87.08355 * 334.56507 * 6 5 3 22 22 H 1.09000 * 109.47270 * 60.00251 * 1 2 3 23 23 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47368 * 299.99889 * 1 2 3 25 25 H 1.08999 * 113.61549 * 25.43196 * 5 3 2 26 26 H 1.09003 * 113.69018 * 254.54099 * 5 3 2 27 27 H 1.09009 * 109.46972 * 299.99362 * 11 9 8 28 28 H 1.08995 * 109.47473 * 59.99636 * 11 9 8 29 29 H 0.96997 * 120.00137 * 180.02562 * 16 15 13 30 30 H 1.08999 * 113.61768 * 139.97773 * 21 6 5 31 31 H 1.08999 * 113.61941 * 270.89282 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 0.3226 5 6 3.3756 1.3720 0.7044 6 6 3.8226 2.3183 -0.4223 7 1 3.6234 3.3695 -0.2143 8 8 5.1812 2.0809 -0.8764 9 6 5.8601 3.1390 -1.3468 10 8 5.3364 4.2274 -1.3785 11 6 7.2752 2.9692 -1.8364 12 16 7.9135 4.5657 -2.4022 13 6 9.5335 4.0872 -2.9034 14 1 9.8466 3.0581 -2.8074 15 6 10.4069 5.0328 -3.4225 16 7 11.6171 4.6753 -3.7974 17 14 9.8652 6.8127 -3.5892 18 1 10.1995 7.5505 -2.3445 19 1 10.5669 7.4382 -4.7389 20 1 8.3987 6.8646 -3.8166 21 6 2.7534 1.6490 -1.3018 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.9089 0.4214 0.7137 26 1 3.3398 1.8468 1.6850 27 1 7.8986 2.5966 -1.0236 28 1 7.2911 2.2579 -2.6621 29 1 12.2276 5.3362 -4.1598 30 1 2.2139 2.3478 -1.9412 31 1 3.1165 0.7741 -1.8410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809111118.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:30 Heat of formation + Delta-G solvation = -110.438668 kcal Electronic energy + Delta-G solvation = -15180.809980 eV Core-core repulsion = 12361.826143 eV Total energy + Delta-G solvation = -2818.983837 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.52769 -39.05922 -36.68136 -35.04761 -32.49296 -29.87867 -27.23830 -26.03879 -25.69916 -24.41115 -21.18754 -20.11289 -18.09328 -17.62034 -16.68447 -16.25440 -16.07835 -15.31355 -15.19824 -14.91761 -14.52172 -13.99164 -13.32333 -13.02139 -12.81142 -12.70738 -12.31563 -11.89710 -11.64829 -11.57225 -11.32058 -11.07195 -11.05376 -10.71495 -10.26913 -10.14069 -9.87771 -9.82029 -9.05677 -8.61736 -7.02396 -6.33544 -4.07817 2.41545 2.51714 3.06049 3.28980 3.44839 3.46356 3.64809 4.18789 4.22527 4.27911 4.51116 4.54570 4.69561 4.90657 5.03684 5.05204 5.06661 5.15360 5.32806 5.47458 5.51609 5.65939 5.68652 5.71738 5.88318 5.97193 6.65327 6.88801 7.89388 8.04599 8.38247 9.11521 10.75552 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.075740 B = 0.003918 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.598927 B = 7145.604582 C = 7324.742886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.065 3.935 4 H 0.094 0.906 5 C -0.130 4.130 6 C 0.060 3.940 7 H 0.115 0.885 8 O -0.342 6.342 9 C 0.478 3.522 10 O -0.492 6.492 11 C -0.100 4.100 12 S -0.141 6.141 13 C -0.522 4.522 14 H 0.092 0.908 15 C 0.097 3.903 16 N -0.877 5.877 17 Si 0.857 3.143 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.236 1.236 21 C -0.165 4.165 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.272 0.728 30 H 0.078 0.922 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.721 -7.027 7.704 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.291 6.291 3 C 0.006 3.994 4 H 0.111 0.889 5 C -0.168 4.168 6 C 0.005 3.995 7 H 0.132 0.868 8 O -0.260 6.260 9 C 0.320 3.680 10 O -0.377 6.377 11 C -0.248 4.248 12 S 0.085 5.915 13 C -0.670 4.670 14 H 0.110 0.890 15 C -0.112 4.112 16 N -0.514 5.514 17 Si 0.681 3.319 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.160 1.160 21 C -0.203 4.203 22 H 0.061 0.939 23 H 0.104 0.896 24 H 0.061 0.939 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.118 -5.806 7.601 22.276 hybrid contribution 0.397 -0.162 -0.155 0.456 sum -19.721 -5.968 7.446 21.909 Atomic orbital electron populations 1.22815 0.81061 1.02863 1.00038 1.87961 1.19734 1.26831 1.94559 1.23347 0.93713 0.85629 0.96669 0.88861 1.23481 0.94645 1.01074 0.97593 1.24009 0.78976 1.00610 0.95933 0.86770 1.86626 1.27076 1.38806 1.73453 1.23308 0.88454 0.82242 0.74020 1.90642 1.69394 1.26813 1.50888 1.23015 0.90902 1.05807 1.05094 1.84784 1.16921 1.07813 1.81932 1.22266 0.95880 0.99875 1.48941 0.89037 1.24700 0.93945 0.99172 0.93397 1.69932 1.05740 1.35235 1.40447 0.86742 0.81689 0.84467 0.78977 1.19125 1.19798 1.15964 1.23968 0.96547 1.01914 0.97837 0.93894 0.89581 0.93939 0.87674 0.89854 0.87147 0.87116 0.91811 0.90340 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.77 10.71 -35.23 -0.38 -4.15 16 3 C 0.06 0.60 4.31 -25.92 -0.11 0.49 16 4 H 0.09 0.68 7.87 -51.93 -0.41 0.27 16 5 C -0.13 -1.31 7.75 -25.92 -0.20 -1.51 16 6 C 0.06 0.76 4.25 -25.92 -0.11 0.64 16 7 H 0.11 1.46 7.07 -51.93 -0.37 1.10 16 8 O -0.34 -5.33 10.24 -39.24 -0.40 -5.73 16 9 C 0.48 8.81 7.98 36.00 0.29 9.09 16 10 O -0.49 -10.19 15.04 -18.76 -0.28 -10.47 16 11 C -0.10 -1.97 6.27 36.00 0.23 -1.75 16 12 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 13 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 14 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 15 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 16 N -0.88 -26.23 13.97 55.49 0.78 -25.46 16 17 Si 0.86 21.40 27.74 -169.99 -4.71 16.68 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.24 -5.85 6.74 56.52 0.38 -5.46 16 21 C -0.16 -1.79 7.75 -25.92 -0.20 -1.99 16 22 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.11 2.03 8.14 -51.91 -0.42 1.60 16 28 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 286.46 15.07 4.32 4.32 Total: -1.00 -32.16 286.46 -5.64 -37.80 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.16 Total: -1.91 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 1.20 Total: -5.58 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.78 Total: -25.46 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.06 Total: -20.35 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.16 -5.64 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809111118.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.641 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds