Wall clock time and date at job start Mon Mar 30 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35317 * 125.86956 * 2 1 4 4 C 1.35349 * 106.17446 * 179.97438 * 3 2 1 5 5 S 1.76198 * 126.75167 * 179.97438 * 4 3 2 6 6 O 1.42099 * 106.40259 * 263.59033 * 5 4 3 7 7 O 1.42104 * 106.40286 * 36.50668 * 5 4 3 8 8 N 1.65600 * 107.22266 * 150.04838 * 5 4 3 9 9 C 1.46500 * 119.99677 * 64.99938 * 8 5 4 10 10 C 1.50703 * 109.46916 * 165.00723 * 9 8 5 11 11 H 1.07999 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99862 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00187 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99983 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46950 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46831 * 119.99730 * 14 12 10 17 17 H 1.48497 * 109.47368 * 240.00052 * 14 12 10 18 18 N 1.33777 * 106.49799 * 0.02562 * 4 3 2 19 19 N 1.28634 * 108.88349 * 359.97438 * 18 4 3 20 20 H 1.09000 * 109.47415 * 270.01479 * 1 2 3 21 21 H 1.09005 * 109.47124 * 30.01074 * 1 2 3 22 22 H 1.09000 * 109.47717 * 150.01396 * 1 2 3 23 23 H 1.07995 * 126.91332 * 0.02562 * 3 2 1 24 24 H 0.96996 * 120.00290 * 245.00543 * 8 5 4 25 25 H 1.09006 * 109.47208 * 285.00084 * 9 8 5 26 26 H 1.08997 * 109.47356 * 44.99966 * 9 8 5 27 27 H 0.96992 * 120.00211 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 0.0006 5 16 5.0005 1.6143 0.0002 6 8 5.4193 1.7083 -1.3544 7 8 4.7291 2.7498 0.8104 8 7 6.1664 0.7437 0.7908 9 6 6.6488 -0.5182 0.2240 10 6 7.9300 -0.9192 0.9088 11 1 8.3437 -0.2962 1.6880 12 6 8.5739 -2.0815 0.5406 13 7 8.0699 -2.8404 -0.4079 14 14 10.1623 -2.5782 1.3890 15 1 10.5152 -1.5623 2.4130 16 1 9.9816 -3.8986 2.0441 17 1 11.2525 -2.6689 0.3848 18 7 3.4575 -0.6953 0.0003 19 7 2.2191 -1.0431 0.0002 20 1 -0.3634 0.0003 1.0276 21 1 -0.3634 0.8899 -0.5140 22 1 -0.3634 -0.8901 -0.5136 23 1 1.9381 2.1281 0.0004 24 1 6.5299 1.0691 1.6291 25 1 5.8983 -1.2944 0.3740 26 1 6.8315 -0.3909 -0.8430 27 1 8.5230 -3.6578 -0.6671 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886022273.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:24 Heat of formation + Delta-G solvation = 26.423449 kcal Electronic energy + Delta-G solvation = -15777.399657 eV Core-core repulsion = 12893.103014 eV Total energy + Delta-G solvation = -2884.296643 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.31476 -36.69467 -35.39636 -34.87363 -34.46540 -32.04243 -31.35480 -28.21774 -26.61911 -23.47972 -22.36213 -22.23658 -19.19400 -18.02091 -17.21280 -16.85156 -16.20538 -15.76549 -15.35271 -14.89344 -14.53469 -13.62409 -13.57853 -13.37943 -12.44521 -12.20110 -12.02992 -11.78738 -11.67408 -11.51741 -11.27441 -10.92228 -10.87404 -10.62789 -10.36597 -10.02000 -9.74689 -9.27898 -8.80739 -8.08433 -6.03150 -4.07677 0.92478 1.29098 2.17871 2.19389 3.33053 3.39744 3.43096 3.53728 4.00816 4.22271 4.39320 4.45379 4.62892 4.79038 4.91573 5.22036 5.33013 5.45910 5.55704 6.33774 6.58428 7.49226 7.62676 7.90106 7.95274 8.28910 8.31902 8.96522 9.55681 11.06939 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.006764 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.325310 B = 4138.383711 C = 4730.195220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.297 5.297 3 C 0.048 3.952 4 C -0.570 4.570 5 S 2.725 3.275 6 O -0.950 6.950 7 O -0.975 6.975 8 N -1.090 6.090 9 C 0.242 3.758 10 C -0.528 4.528 11 H 0.065 0.935 12 C 0.061 3.939 13 N -0.887 5.887 14 Si 0.902 3.098 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 N -0.163 5.163 19 N -0.080 5.080 20 H 0.095 0.905 21 H 0.101 0.899 22 H 0.105 0.895 23 H 0.204 0.796 24 H 0.412 0.588 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 7.495 1.652 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.087 5.087 3 C -0.107 4.107 4 C -0.787 4.787 5 S 2.804 3.196 6 O -0.939 6.939 7 O -0.964 6.964 8 N -0.854 5.854 9 C 0.119 3.881 10 C -0.568 4.568 11 H 0.083 0.917 12 C -0.142 4.142 13 N -0.525 5.525 14 Si 0.729 3.271 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 N -0.032 5.032 19 N -0.062 5.062 20 H 0.113 0.887 21 H 0.120 0.880 22 H 0.123 0.877 23 H 0.221 0.779 24 H 0.246 0.754 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.546 6.479 0.984 16.871 hybrid contribution 0.183 0.249 0.904 0.955 sum -15.364 6.728 1.888 16.878 Atomic orbital electron populations 1.22362 0.72409 1.06272 1.05337 1.47645 1.09737 1.04768 1.46520 1.23438 0.89208 0.95423 1.02639 1.35353 1.18841 1.03968 1.20552 1.01268 0.72221 0.72000 0.74105 1.93603 1.79492 1.85495 1.35300 1.93548 1.85652 1.47347 1.69893 1.55257 1.52439 1.39370 1.38341 1.19257 0.95728 0.78523 0.94605 1.21248 1.07358 1.07382 1.20858 0.91674 1.24965 0.97949 0.96148 0.95178 1.69974 1.39399 1.13983 1.29103 0.86395 0.82956 0.78394 0.79338 1.19685 1.20971 1.20906 1.75382 1.09020 1.08625 1.10220 1.78341 0.97002 1.11784 1.19102 0.88701 0.87997 0.87653 0.77874 0.75356 0.94069 0.94458 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.39 59.84 0.68 1.12 15 2 N -0.30 -3.73 3.74 -68.06 -0.25 -3.99 15 3 C 0.05 0.63 11.52 -17.04 -0.20 0.44 15 4 C -0.57 -10.19 7.21 -17.73 -0.13 -10.32 15 5 S 2.72 51.83 5.88 -107.50 -0.63 51.19 15 6 O -0.95 -21.05 17.49 -57.17 -1.00 -22.05 15 7 O -0.97 -18.06 17.98 -57.17 -1.03 -19.09 15 8 N -1.09 -23.07 5.99 -11.65 -0.07 -23.14 15 9 C 0.24 6.32 5.86 -5.19 -0.03 6.29 15 10 C -0.53 -14.69 9.27 -34.44 -0.32 -15.01 15 11 H 0.07 1.71 7.65 -52.49 -0.40 1.31 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 13 N -0.89 -26.42 13.29 55.43 0.74 -25.68 15 14 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 15 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 18 N -0.16 -3.34 11.43 30.88 0.35 -2.98 15 19 N -0.08 -1.40 13.16 60.35 0.79 -0.60 15 20 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 15 21 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 15 22 H 0.10 0.51 8.14 -51.93 -0.42 0.08 15 23 H 0.20 1.65 8.06 -52.49 -0.42 1.23 15 24 H 0.41 7.78 8.54 -34.47 -0.29 7.49 15 25 H 0.04 1.13 7.27 -51.93 -0.38 0.75 15 26 H 0.04 1.06 7.75 -51.93 -0.40 0.66 15 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 262.53 15.07 3.96 3.96 Total: -1.00 -37.37 262.53 -4.56 -41.93 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -2.30 Total: -0.12 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.09 Total: -15.85 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 1.56 Total: -56.39 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -2.03 Total: -41.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 51.83 SS G_CDS: -0.63 Total: 51.19 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -37.37 -4.56 -41.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886022273.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.351 kcal (2) G-P(sol) polarization free energy of solvation -37.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds