Wall clock time and date at job start Mon Mar 30 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35317 * 125.86956 * 2 1 4 4 C 1.35349 * 106.17446 * 179.97438 * 3 2 1 5 5 S 1.76198 * 126.75167 * 179.97438 * 4 3 2 6 6 O 1.42099 * 106.40259 * 263.59033 * 5 4 3 7 7 O 1.42104 * 106.40286 * 36.50668 * 5 4 3 8 8 N 1.65600 * 107.22266 * 150.04838 * 5 4 3 9 9 C 1.46500 * 119.99677 * 64.99938 * 8 5 4 10 10 C 1.50703 * 109.46916 * 165.00723 * 9 8 5 11 11 H 1.07999 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99862 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00187 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99983 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46950 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46831 * 119.99730 * 14 12 10 17 17 H 1.48497 * 109.47368 * 240.00052 * 14 12 10 18 18 N 1.33777 * 106.49799 * 0.02562 * 4 3 2 19 19 N 1.28634 * 108.88349 * 359.97438 * 18 4 3 20 20 H 1.09000 * 109.47415 * 270.01479 * 1 2 3 21 21 H 1.09005 * 109.47124 * 30.01074 * 1 2 3 22 22 H 1.09000 * 109.47717 * 150.01396 * 1 2 3 23 23 H 1.07995 * 126.91332 * 0.02562 * 3 2 1 24 24 H 0.96996 * 120.00290 * 245.00543 * 8 5 4 25 25 H 1.09006 * 109.47208 * 285.00084 * 9 8 5 26 26 H 1.08997 * 109.47356 * 44.99966 * 9 8 5 27 27 H 0.96992 * 120.00211 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 0.0006 5 16 5.0005 1.6143 0.0002 6 8 5.4193 1.7083 -1.3544 7 8 4.7291 2.7498 0.8104 8 7 6.1664 0.7437 0.7908 9 6 6.6488 -0.5182 0.2240 10 6 7.9300 -0.9192 0.9088 11 1 8.3437 -0.2962 1.6880 12 6 8.5739 -2.0815 0.5406 13 7 8.0699 -2.8404 -0.4079 14 14 10.1623 -2.5782 1.3890 15 1 10.5152 -1.5623 2.4130 16 1 9.9816 -3.8986 2.0441 17 1 11.2525 -2.6689 0.3848 18 7 3.4575 -0.6953 0.0003 19 7 2.2191 -1.0431 0.0002 20 1 -0.3634 0.0003 1.0276 21 1 -0.3634 0.8899 -0.5140 22 1 -0.3634 -0.8901 -0.5136 23 1 1.9381 2.1281 0.0004 24 1 6.5299 1.0691 1.6291 25 1 5.8983 -1.2944 0.3740 26 1 6.8315 -0.3909 -0.8430 27 1 8.5230 -3.6578 -0.6671 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886022273.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:24 Heat of formation + Delta-G solvation = -6.594748 kcal Electronic energy + Delta-G solvation = -15778.831433 eV Core-core repulsion = 12893.103014 eV Total energy + Delta-G solvation = -2885.728419 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.47974 -38.28175 -37.01153 -36.46290 -35.81220 -34.09973 -32.55735 -28.98362 -28.69388 -24.75054 -24.43063 -23.32058 -20.65727 -19.41007 -18.92726 -17.97665 -17.61175 -17.34798 -17.07963 -16.38445 -16.00126 -15.23970 -14.44392 -14.28646 -14.12863 -14.05094 -13.59590 -13.36461 -13.28166 -13.16147 -12.75775 -12.60515 -12.48046 -12.19069 -12.05304 -11.41666 -11.33824 -10.96489 -10.82198 -10.07549 -8.18492 -6.31466 -0.58456 0.22826 0.84204 1.37590 1.46317 1.47241 1.60365 1.97779 2.45090 2.55715 3.15529 3.26050 3.57175 3.73519 3.84177 4.29410 4.32161 4.58149 4.62599 4.70015 5.36409 5.41036 5.48324 5.81378 6.02093 6.36660 6.83930 7.06627 7.37351 8.93082 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.006764 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.325310 B = 4138.383711 C = 4730.195220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.281 5.281 3 C 0.074 3.926 4 C -0.606 4.606 5 S 2.754 3.246 6 O -0.987 6.987 7 O -0.966 6.966 8 N -1.095 6.095 9 C 0.258 3.742 10 C -0.548 4.548 11 H 0.077 0.923 12 C 0.003 3.997 13 N -0.928 5.928 14 Si 0.977 3.023 15 H -0.258 1.258 16 H -0.279 1.279 17 H -0.279 1.279 18 N -0.220 5.220 19 N -0.105 5.105 20 H 0.119 0.881 21 H 0.143 0.857 22 H 0.112 0.888 23 H 0.259 0.741 24 H 0.421 0.579 25 H 0.023 0.977 26 H 0.005 0.995 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.833 8.735 2.748 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.071 5.071 3 C -0.082 4.082 4 C -0.827 4.827 5 S 2.837 3.163 6 O -0.976 6.976 7 O -0.955 6.955 8 N -0.858 5.858 9 C 0.133 3.867 10 C -0.588 4.588 11 H 0.096 0.904 12 C -0.196 4.196 13 N -0.567 5.567 14 Si 0.801 3.199 15 H -0.182 1.182 16 H -0.204 1.204 17 H -0.205 1.205 18 N -0.089 5.089 19 N -0.087 5.087 20 H 0.137 0.863 21 H 0.162 0.838 22 H 0.131 0.869 23 H 0.275 0.725 24 H 0.257 0.743 25 H 0.041 0.959 26 H 0.023 0.977 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.885 7.740 2.101 18.693 hybrid contribution 0.352 -0.067 0.554 0.659 sum -16.533 7.674 2.655 18.420 Atomic orbital electron populations 1.23050 0.68262 1.08793 1.07698 1.48143 1.11817 1.03499 1.43650 1.24201 0.87421 0.97537 0.99070 1.34931 1.20106 1.03578 1.24042 1.00128 0.71858 0.71520 0.72827 1.93554 1.80629 1.86176 1.37278 1.93550 1.85589 1.46938 1.69474 1.55063 1.54179 1.37854 1.38680 1.18733 0.95117 0.79979 0.92874 1.21703 1.08032 1.07842 1.21185 0.90446 1.25972 1.01752 0.96119 0.95781 1.70118 1.41254 1.14582 1.30745 0.85233 0.78092 0.78254 0.78364 1.18191 1.20436 1.20516 1.75329 1.10921 1.10205 1.12454 1.78204 0.96674 1.13719 1.20118 0.86317 0.83838 0.86947 0.72492 0.74337 0.95899 0.97715 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 11.39 127.77 1.46 1.89 15 2 N -0.28 -6.34 3.74 -369.25 -1.38 -7.72 15 3 C 0.07 1.74 11.52 83.49 0.96 2.70 15 4 C -0.61 -21.38 7.21 83.73 0.60 -20.77 15 5 S 2.75 104.93 5.88 -56.49 -0.33 104.60 15 6 O -0.99 -44.75 17.49 -128.00 -2.24 -46.99 15 7 O -0.97 -34.27 17.98 -128.00 -2.30 -36.57 15 8 N -1.09 -47.40 5.99 -190.78 -1.14 -48.54 15 9 C 0.26 14.05 5.86 85.63 0.50 14.55 15 10 C -0.55 -31.00 9.27 25.60 0.24 -30.76 15 11 H 0.08 4.06 7.65 -2.91 -0.02 4.04 15 12 C 0.00 0.18 5.46 84.66 0.46 0.65 15 13 N -0.93 -56.83 13.29 21.45 0.28 -56.54 15 14 Si 0.98 44.15 29.54 68.60 2.03 46.18 15 15 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 18 N -0.22 -9.19 11.43 -56.20 -0.64 -9.84 15 19 N -0.10 -3.62 13.16 37.02 0.49 -3.13 15 20 H 0.12 0.41 8.14 -2.39 -0.02 0.39 15 21 H 0.14 -0.08 8.14 -2.38 -0.02 -0.10 15 22 H 0.11 0.73 8.14 -2.39 -0.02 0.71 15 23 H 0.26 2.81 8.06 -2.91 -0.02 2.78 15 24 H 0.42 16.05 8.54 -96.75 -0.83 15.22 15 25 H 0.02 1.34 7.27 -2.38 -0.02 1.32 15 26 H 0.00 0.29 7.75 -2.39 -0.02 0.27 15 27 H 0.27 15.26 8.31 -92.71 -0.77 14.48 15 Total: -1.00 -84.09 262.53 -0.63 -84.73 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.38 Total: 5.58 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.22 Total: -31.75 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -2.39 Total: -125.77 kcal Atomic # 8 Polarization: -79.02 SS G_CDS: -4.54 Total: -83.56 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 104.93 SS G_CDS: -0.33 Total: 104.60 kcal Total: -84.09 -0.63 -84.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886022273.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.133 kcal (2) G-P(sol) polarization free energy of solvation -84.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds