Wall clock time and date at job start Mon Mar 30 2020 03:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47282 * 2 1 4 4 C 1.35313 * 125.87113 * 125.32685 * 3 2 1 5 5 C 1.35349 * 106.17653 * 180.12239 * 4 3 2 6 6 S 1.76204 * 126.75116 * 179.85560 * 5 4 3 7 7 O 1.42099 * 106.40217 * 156.16853 * 6 5 4 8 8 O 1.42095 * 106.39965 * 23.24718 * 6 5 4 9 9 N 1.65597 * 107.21524 * 269.70658 * 6 5 4 10 10 C 1.36935 * 119.99794 * 65.00019 * 9 6 5 11 11 H 1.08000 * 120.00518 * 359.72739 * 10 9 6 12 12 C 1.38817 * 119.99990 * 179.97438 * 10 9 6 13 13 N 1.31617 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46676 * 90.00727 * 14 12 10 16 16 H 1.48502 * 109.46977 * 210.00025 * 14 12 10 17 17 H 1.48494 * 109.47494 * 330.00753 * 14 12 10 18 18 N 1.33778 * 106.49578 * 359.58682 * 5 4 3 19 19 N 1.28634 * 108.88443 * 0.26948 * 18 5 4 20 20 H 1.08998 * 109.47311 * 59.99867 * 1 2 3 21 21 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47190 * 299.99680 * 1 2 3 23 23 H 1.09008 * 109.46684 * 240.00362 * 2 1 3 24 24 H 1.08998 * 109.47311 * 120.00133 * 2 1 3 25 25 H 1.08004 * 126.90715 * 359.97358 * 4 3 2 26 26 H 0.96999 * 120.00129 * 244.99728 * 9 6 5 27 27 H 0.96996 * 119.99743 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8804 1.9173 0.8946 5 6 3.0544 3.2074 0.5241 6 16 4.0711 4.4054 1.3215 7 8 4.3899 5.3799 0.3376 8 8 5.0560 3.6790 2.0436 9 7 3.1327 5.1709 2.4510 10 6 2.6404 4.4710 3.5200 11 1 2.8605 3.4188 3.6243 12 6 1.8542 5.1127 4.4671 13 7 1.5815 6.3938 4.3373 14 14 1.1821 4.1578 5.9251 15 1 2.1512 4.2227 7.0485 16 1 -0.1107 4.7510 6.3518 17 1 0.9716 2.7407 5.5343 18 7 2.3073 3.3924 -0.5701 19 7 1.7059 2.2915 -0.8547 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 3.3359 1.4171 1.7365 26 1 2.9318 6.1150 2.3553 27 1 1.0319 6.8421 4.9989 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886022325.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:39 Heat of formation + Delta-G solvation = 20.695965 kcal Electronic energy + Delta-G solvation = -16015.783074 eV Core-core repulsion = 13131.238068 eV Total energy + Delta-G solvation = -2884.545005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.92184 -36.01969 -35.37066 -34.68817 -34.65503 -31.02973 -30.91372 -30.61412 -24.67777 -24.55930 -22.90285 -21.32131 -18.57308 -18.18765 -17.50981 -16.68475 -16.13140 -15.66285 -14.85096 -14.55987 -14.41147 -14.22673 -13.47021 -13.05057 -12.48006 -12.06911 -12.02056 -11.56623 -11.36044 -11.10353 -11.02379 -10.90043 -10.80135 -10.62576 -10.46199 -10.18167 -10.07476 -9.95352 -9.28286 -8.34582 -6.53960 -3.95910 1.49775 1.75385 2.47507 2.57689 3.12248 3.16974 3.18087 4.00646 4.31479 4.44649 4.61524 4.70696 4.79954 4.85060 5.08802 5.16887 5.31309 5.37090 5.68664 5.84355 6.00508 6.17105 6.75742 6.94906 7.42284 8.60543 8.67067 8.73721 9.16991 10.61626 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.009966 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.377067 B = 2808.744248 C = 3761.014441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.300 5.300 4 C 0.047 3.953 5 C -0.556 4.556 6 S 2.635 3.365 7 O -0.985 6.985 8 O -0.968 6.968 9 N -0.938 5.938 10 C -0.274 4.274 11 H 0.103 0.897 12 C 0.032 3.968 13 N -0.870 5.870 14 Si 0.925 3.075 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.270 1.270 18 N -0.188 5.188 19 N -0.096 5.096 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.098 0.902 24 H 0.107 0.893 25 H 0.201 0.799 26 H 0.413 0.587 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -12.558 -2.599 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.091 5.091 4 C -0.107 4.107 5 C -0.769 4.769 6 S 2.719 3.281 7 O -0.974 6.974 8 O -0.958 6.958 9 N -0.691 5.691 10 C -0.416 4.416 11 H 0.121 0.879 12 C -0.177 4.177 13 N -0.511 5.511 14 Si 0.751 3.249 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.195 1.195 18 N -0.057 5.057 19 N -0.077 5.077 20 H 0.093 0.907 21 H 0.100 0.900 22 H 0.086 0.914 23 H 0.116 0.884 24 H 0.125 0.875 25 H 0.218 0.782 26 H 0.249 0.751 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.343 -12.264 -4.166 13.163 hybrid contribution -0.720 -0.923 1.515 1.915 sum -3.063 -13.187 -2.651 13.795 Atomic orbital electron populations 1.22084 0.92655 1.03494 1.04366 1.22107 0.97108 0.76750 1.05168 1.47755 1.30338 1.11963 1.19092 1.23614 0.95412 0.94147 0.97514 1.36366 1.20136 1.13017 1.07368 1.06359 0.77181 0.72577 0.71960 1.93427 1.84590 1.58868 1.60490 1.93477 1.56514 1.74164 1.71618 1.51857 1.71261 1.17869 1.28141 1.19321 1.28634 0.95754 0.97848 0.87905 1.25296 0.96443 0.96006 0.99948 1.69695 1.36374 1.08935 1.36082 0.85963 0.78513 0.79273 0.81135 1.19861 1.20663 1.19504 1.75063 1.04946 1.14925 1.10734 1.78134 1.21034 0.93540 1.14989 0.90667 0.90018 0.91390 0.88408 0.87520 0.78217 0.75079 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.04 37.16 0.37 -1.11 15 2 C 0.11 1.03 7.17 -4.05 -0.03 1.00 15 3 N -0.30 -4.68 3.44 -61.26 -0.21 -4.90 15 4 C 0.05 0.80 11.36 -17.05 -0.19 0.61 15 5 C -0.56 -11.81 7.20 -17.73 -0.13 -11.94 15 6 S 2.64 60.51 5.86 -107.50 -0.63 59.88 15 7 O -0.99 -24.96 18.02 -57.17 -1.03 -25.99 15 8 O -0.97 -22.96 17.57 -57.17 -1.00 -23.96 15 9 N -0.94 -22.90 5.75 31.50 0.18 -22.72 15 10 C -0.27 -6.77 9.63 -15.06 -0.15 -6.92 15 11 H 0.10 2.33 7.82 -52.49 -0.41 1.92 15 12 C 0.03 0.79 5.50 -17.43 -0.10 0.69 15 13 N -0.87 -22.80 13.06 55.49 0.72 -22.08 15 14 Si 0.92 18.94 29.55 -169.99 -5.02 13.92 15 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 16 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 18 N -0.19 -4.18 12.41 30.89 0.38 -3.80 15 19 N -0.10 -1.84 12.91 60.35 0.78 -1.06 15 20 H 0.07 0.76 8.12 -51.93 -0.42 0.34 15 21 H 0.08 0.47 8.14 -51.93 -0.42 0.05 15 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.10 0.73 8.14 -51.92 -0.42 0.31 15 24 H 0.11 0.69 8.07 -51.93 -0.42 0.28 15 25 H 0.20 2.70 8.06 -52.48 -0.42 2.28 15 26 H 0.41 10.32 8.02 -34.47 -0.28 10.05 15 27 H 0.28 6.78 8.31 -40.82 -0.34 6.44 15 LS Contribution 263.62 15.07 3.97 3.97 Total: -1.00 -33.40 263.62 -4.43 -37.83 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -2.35 Total: 6.55 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.22 Total: -17.66 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 1.86 Total: -54.55 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.03 Total: -49.95 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 60.51 SS G_CDS: -0.63 Total: 59.88 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.40 -4.43 -37.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886022325.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.531 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds