Wall clock time and date at job start Mon Mar 30 2020 03:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47282 * 2 1 4 4 C 1.35313 * 125.87113 * 125.32685 * 3 2 1 5 5 C 1.35349 * 106.17653 * 180.12239 * 4 3 2 6 6 S 1.76204 * 126.75116 * 179.85560 * 5 4 3 7 7 O 1.42099 * 106.40217 * 156.16853 * 6 5 4 8 8 O 1.42095 * 106.39965 * 23.24718 * 6 5 4 9 9 N 1.65597 * 107.21524 * 269.70658 * 6 5 4 10 10 C 1.36935 * 119.99794 * 65.00019 * 9 6 5 11 11 H 1.08000 * 120.00518 * 359.72739 * 10 9 6 12 12 C 1.38817 * 119.99990 * 179.97438 * 10 9 6 13 13 N 1.31617 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46676 * 90.00727 * 14 12 10 16 16 H 1.48502 * 109.46977 * 210.00025 * 14 12 10 17 17 H 1.48494 * 109.47494 * 330.00753 * 14 12 10 18 18 N 1.33778 * 106.49578 * 359.58682 * 5 4 3 19 19 N 1.28634 * 108.88443 * 0.26948 * 18 5 4 20 20 H 1.08998 * 109.47311 * 59.99867 * 1 2 3 21 21 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47190 * 299.99680 * 1 2 3 23 23 H 1.09008 * 109.46684 * 240.00362 * 2 1 3 24 24 H 1.08998 * 109.47311 * 120.00133 * 2 1 3 25 25 H 1.08004 * 126.90715 * 359.97358 * 4 3 2 26 26 H 0.96999 * 120.00129 * 244.99728 * 9 6 5 27 27 H 0.96996 * 119.99743 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8804 1.9173 0.8946 5 6 3.0544 3.2074 0.5241 6 16 4.0711 4.4054 1.3215 7 8 4.3899 5.3799 0.3376 8 8 5.0560 3.6790 2.0436 9 7 3.1327 5.1709 2.4510 10 6 2.6404 4.4710 3.5200 11 1 2.8605 3.4188 3.6243 12 6 1.8542 5.1127 4.4671 13 7 1.5815 6.3938 4.3373 14 14 1.1821 4.1578 5.9251 15 1 2.1512 4.2227 7.0485 16 1 -0.1107 4.7510 6.3518 17 1 0.9716 2.7407 5.5343 18 7 2.3073 3.3924 -0.5701 19 7 1.7059 2.2915 -0.8547 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 3.3359 1.4171 1.7365 26 1 2.9318 6.1150 2.3553 27 1 1.0319 6.8421 4.9989 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886022325.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:39 Heat of formation + Delta-G solvation = -7.389385 kcal Electronic energy + Delta-G solvation = -16017.000946 eV Core-core repulsion = 13131.238068 eV Total energy + Delta-G solvation = -2885.762877 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.36667 -38.00122 -36.68051 -36.50808 -36.45450 -32.85152 -32.38545 -31.73023 -26.43289 -25.70090 -24.45421 -22.59706 -20.29265 -19.98902 -19.02713 -18.36248 -17.47453 -17.25158 -16.59898 -16.18302 -15.82977 -15.29481 -15.26750 -14.01639 -13.78666 -13.41558 -13.24312 -13.08459 -12.98672 -12.98127 -12.84573 -12.59373 -12.31824 -12.25744 -12.08854 -11.88827 -11.81821 -11.28942 -10.80325 -10.19224 -8.32033 -5.87554 -0.31182 0.34858 0.94649 1.37522 1.50545 1.55281 1.62307 2.31147 2.66532 2.94152 3.15564 3.30868 3.50502 3.81959 3.92543 4.13565 4.23388 4.42643 4.51169 4.70326 4.86161 5.09715 5.18275 5.54004 5.60289 6.72428 6.97057 7.16907 7.31036 8.86329 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.009966 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.377067 B = 2808.744248 C = 3761.014441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.282 5.282 4 C 0.067 3.933 5 C -0.593 4.593 6 S 2.694 3.306 7 O -1.009 7.009 8 O -0.974 6.974 9 N -0.964 5.964 10 C -0.308 4.308 11 H 0.120 0.880 12 C -0.020 4.020 13 N -0.925 5.925 14 Si 0.987 3.013 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.249 1.249 18 N -0.229 5.229 19 N -0.101 5.101 20 H 0.055 0.945 21 H 0.119 0.881 22 H 0.051 0.949 23 H 0.124 0.876 24 H 0.147 0.853 25 H 0.243 0.757 26 H 0.406 0.594 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -16.121 -2.545 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.074 5.074 4 C -0.088 4.088 5 C -0.811 4.811 6 S 2.780 3.220 7 O -0.999 6.999 8 O -0.964 6.964 9 N -0.717 5.717 10 C -0.444 4.444 11 H 0.138 0.862 12 C -0.223 4.223 13 N -0.567 5.567 14 Si 0.810 3.190 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.173 1.173 18 N -0.098 5.098 19 N -0.083 5.083 20 H 0.074 0.926 21 H 0.137 0.863 22 H 0.070 0.930 23 H 0.142 0.858 24 H 0.165 0.835 25 H 0.259 0.741 26 H 0.241 0.759 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.410 -15.832 -4.041 16.516 hybrid contribution -0.611 -0.058 1.204 1.352 sum -3.022 -15.889 -2.837 16.421 Atomic orbital electron populations 1.22105 0.92242 1.05423 1.02618 1.22855 0.97504 0.73580 1.08568 1.48257 1.28579 1.13377 1.17211 1.24152 0.94233 0.92730 0.97728 1.35532 1.22061 1.14579 1.08919 1.03122 0.75470 0.72149 0.71298 1.93414 1.84772 1.60291 1.61397 1.93479 1.56523 1.74411 1.71964 1.51535 1.71426 1.18160 1.30575 1.19688 1.29456 0.96289 0.99016 0.86205 1.26160 0.96957 0.96764 1.02404 1.69819 1.38683 1.10677 1.37527 0.85012 0.77323 0.78883 0.77733 1.19706 1.21275 1.17257 1.75032 1.06212 1.16854 1.11730 1.78020 1.20785 0.93596 1.15889 0.92558 0.86252 0.92986 0.85762 0.83466 0.74128 0.75897 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.04 71.98 0.72 -1.59 15 2 C 0.09 1.29 7.17 86.38 0.62 1.90 15 3 N -0.28 -7.83 3.44 -347.74 -1.20 -9.02 15 4 C 0.07 2.07 11.36 83.49 0.95 3.02 15 5 C -0.59 -24.28 7.20 83.73 0.60 -23.68 15 6 S 2.69 122.36 5.86 -56.49 -0.33 122.03 15 7 O -1.01 -51.38 18.02 -128.00 -2.31 -53.68 15 8 O -0.97 -44.58 17.57 -128.00 -2.25 -46.83 15 9 N -0.96 -47.83 5.75 -54.26 -0.31 -48.15 15 10 C -0.31 -15.26 9.63 84.04 0.81 -14.45 15 11 H 0.12 5.26 7.82 -2.91 -0.02 5.23 15 12 C -0.02 -1.03 5.50 84.86 0.47 -0.56 15 13 N -0.92 -50.44 13.06 21.65 0.28 -50.15 15 14 Si 0.99 38.69 29.55 68.60 2.03 40.72 15 15 H -0.27 -10.43 7.11 99.48 0.71 -9.73 15 16 H -0.29 -11.34 7.11 99.48 0.71 -10.64 15 17 H -0.25 -8.74 7.11 99.48 0.71 -8.03 15 18 N -0.23 -10.04 12.41 -56.20 -0.70 -10.74 15 19 N -0.10 -3.70 12.91 37.02 0.48 -3.22 15 20 H 0.06 1.01 8.12 -2.39 -0.02 0.99 15 21 H 0.12 0.79 8.14 -2.39 -0.02 0.77 15 22 H 0.05 0.91 8.14 -2.38 -0.02 0.89 15 23 H 0.12 1.19 8.14 -2.38 -0.02 1.17 15 24 H 0.15 0.95 8.07 -2.39 -0.02 0.93 15 25 H 0.24 5.22 8.06 -2.91 -0.02 5.20 15 26 H 0.41 21.20 8.02 -96.75 -0.78 20.43 15 27 H 0.27 14.06 8.31 -92.71 -0.77 13.28 15 Total: -1.00 -74.21 263.62 0.30 -73.92 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.43 Total: 20.50 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 4.17 Total: -35.36 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -1.44 Total: -121.28 kcal Atomic # 8 Polarization: -95.96 SS G_CDS: -4.56 Total: -100.52 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 16 Polarization: 122.36 SS G_CDS: -0.33 Total: 122.03 kcal Total: -74.21 0.30 -73.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886022325.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.529 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds