Wall clock time and date at job start Mon Mar 30 2020 03:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28710 * 125.86974 * 2 1 4 4 N 1.28627 * 110.17993 * 180.23867 * 3 2 1 5 5 C 1.33776 * 108.88890 * 359.76155 * 4 3 2 6 6 C 1.35313 * 125.86687 * 179.83323 * 2 1 3 7 7 S 1.76198 * 126.91325 * 0.02624 * 6 2 1 8 8 O 1.42106 * 106.40024 * 156.17230 * 7 6 2 9 9 O 1.42105 * 106.40118 * 23.25848 * 7 6 2 10 10 N 1.65596 * 107.22309 * 269.71438 * 7 6 2 11 11 C 1.46506 * 119.99677 * 65.00118 * 10 7 6 12 12 C 1.50699 * 109.46928 * 165.00101 * 11 10 7 13 13 H 1.08003 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00518 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46922 * 90.00621 * 16 14 12 18 18 H 1.48500 * 109.47411 * 210.00442 * 16 14 12 19 19 H 1.48494 * 109.47378 * 330.00637 * 16 14 12 20 20 H 1.09001 * 109.47504 * 270.16774 * 1 2 3 21 21 H 1.09001 * 109.47569 * 30.16920 * 1 2 3 22 22 H 1.09000 * 109.47276 * 150.16806 * 1 2 3 23 23 H 1.07993 * 126.75445 * 179.97438 * 5 4 3 24 24 H 0.96996 * 120.00260 * 244.99697 * 10 7 6 25 25 H 1.09004 * 109.47073 * 284.99929 * 11 10 7 26 26 H 1.09000 * 109.47212 * 45.00012 * 11 10 7 27 27 H 0.96992 * 120.00316 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0430 0.0000 4 7 3.4575 0.6952 -0.0050 5 6 3.5322 -0.6405 -0.0033 6 6 2.2578 -1.0965 0.0032 7 16 1.7362 -2.7795 0.0074 8 8 2.8087 -3.5334 -0.5409 9 8 0.4213 -2.7935 -0.5313 10 7 1.5980 -3.2460 1.5903 11 6 0.5907 -2.6225 2.4524 12 6 0.4147 -3.4505 3.6992 13 1 0.9954 -4.3509 3.8360 14 6 -0.4867 -3.0581 4.6657 15 7 -1.1935 -1.9615 4.4995 16 14 -0.7055 -4.0848 6.2109 17 1 0.2400 -3.6150 7.2552 18 1 -2.0987 -3.9446 6.7054 19 1 -0.4316 -5.5109 5.9006 20 1 -0.3634 0.0030 1.0276 21 1 -0.3634 0.8884 -0.5164 22 1 -0.3634 -0.8915 -0.5112 23 1 4.4321 -1.2374 -0.0068 24 1 2.1838 -3.9321 1.9467 25 1 0.9173 -1.6191 2.7257 26 1 -0.3578 -2.5632 1.9187 27 1 -1.8279 -1.6857 5.1793 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886022329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:27 Heat of formation + Delta-G solvation = -2.762044 kcal Electronic energy + Delta-G solvation = -16185.998690 eV Core-core repulsion = 13300.436469 eV Total energy + Delta-G solvation = -2885.562221 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.53183 -38.55671 -37.13873 -36.56548 -35.81409 -34.17334 -32.61678 -29.07338 -28.75875 -24.66054 -24.39595 -23.65232 -20.75236 -19.57339 -18.98128 -18.15212 -17.63140 -17.53078 -17.18002 -16.46931 -15.65087 -15.29669 -14.66490 -14.40252 -14.26904 -14.05631 -13.87305 -13.66076 -13.34359 -13.14978 -12.77436 -12.61771 -12.57486 -12.24364 -12.11029 -11.51432 -11.40959 -11.05915 -10.87499 -10.22393 -8.27099 -6.37677 -0.83867 -0.14079 1.12633 1.13850 1.46031 1.47611 1.57422 1.95010 2.41357 2.51211 2.92993 3.09851 3.45651 3.64131 3.92419 4.16202 4.46052 4.50407 4.58337 4.81428 5.10507 5.20729 5.26168 5.72554 5.92648 6.25261 6.75407 7.01049 7.32425 8.83710 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.007674 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.284975 B = 3647.963844 C = 4021.210018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.212 5.212 3 N -0.065 5.065 4 N -0.305 5.305 5 C 0.063 3.937 6 C -0.601 4.601 7 S 2.745 3.255 8 O -0.959 6.959 9 O -0.967 6.967 10 N -1.092 6.092 11 C 0.256 3.744 12 C -0.549 4.549 13 H 0.077 0.923 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.968 3.032 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.263 1.263 20 H 0.107 0.893 21 H 0.141 0.859 22 H 0.134 0.866 23 H 0.236 0.764 24 H 0.424 0.576 25 H 0.005 0.995 26 H 0.028 0.972 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.721 0.242 -6.846 7.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.009 5.009 3 N -0.047 5.047 4 N -0.167 5.167 5 C -0.099 4.099 6 C -0.813 4.813 7 S 2.825 3.175 8 O -0.948 6.948 9 O -0.957 6.957 10 N -0.856 5.856 11 C 0.131 3.869 12 C -0.589 4.589 13 H 0.095 0.905 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.793 3.207 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.187 1.187 20 H 0.126 0.874 21 H 0.159 0.841 22 H 0.152 0.848 23 H 0.252 0.748 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.324 1.621 -7.590 8.443 hybrid contribution 0.036 -0.861 1.380 1.627 sum 3.360 0.759 -6.210 7.101 Atomic orbital electron populations 1.23405 0.69601 1.09963 1.07785 1.47366 1.10577 1.02384 1.40587 1.78090 0.97197 1.13470 1.15987 1.75079 1.09582 1.13133 1.18875 1.24216 0.97312 0.91568 0.96830 1.35040 1.00918 1.18594 1.26753 1.00656 0.73034 0.71283 0.72485 1.93578 1.56541 1.67414 1.77264 1.93500 1.38494 1.85852 1.77864 1.55287 1.48173 1.51979 1.30169 1.18775 0.85774 0.92579 0.89738 1.21610 1.23524 1.10420 1.03329 0.90521 1.25788 0.94997 0.96301 1.01703 1.69999 1.25565 1.24351 1.36304 0.85399 0.77300 0.79288 0.78757 1.20113 1.20988 1.18669 0.87428 0.84066 0.84832 0.74762 0.73876 0.97707 0.95394 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.13 127.77 1.42 2.24 15 2 N -0.21 -6.75 3.74 -366.38 -1.37 -8.12 15 3 N -0.07 -2.25 13.16 37.02 0.49 -1.76 15 4 N -0.31 -10.41 12.41 -58.26 -0.72 -11.13 15 5 C 0.06 1.88 11.85 83.73 0.99 2.88 15 6 C -0.60 -18.95 7.03 83.49 0.59 -18.37 15 7 S 2.74 87.24 5.83 -56.49 -0.33 86.91 15 8 O -0.96 -31.23 17.88 -128.00 -2.29 -33.52 15 9 O -0.97 -34.00 14.81 -128.00 -1.90 -35.90 15 10 N -1.09 -38.36 5.99 -190.77 -1.14 -39.50 15 11 C 0.26 11.40 5.98 85.63 0.51 11.91 15 12 C -0.55 -27.11 9.27 25.60 0.24 -26.88 15 13 H 0.08 3.56 7.65 -2.91 -0.02 3.53 15 14 C 0.01 0.64 5.46 84.65 0.46 1.10 15 15 N -0.92 -49.55 13.29 21.45 0.28 -49.27 15 16 Si 0.97 40.02 29.54 68.60 2.03 42.05 15 17 H -0.28 -11.18 7.11 99.48 0.71 -10.48 15 18 H -0.28 -11.68 7.11 99.48 0.71 -10.98 15 19 H -0.26 -10.39 7.11 99.48 0.71 -9.69 15 20 H 0.11 2.98 8.14 -2.39 -0.02 2.96 15 21 H 0.14 2.67 8.14 -2.39 -0.02 2.65 15 22 H 0.13 3.52 5.55 -2.39 -0.01 3.51 15 23 H 0.24 5.04 8.06 -2.91 -0.02 5.02 15 24 H 0.42 13.24 8.54 -96.75 -0.83 12.41 15 25 H 0.01 0.24 8.14 -2.38 -0.02 0.22 15 26 H 0.03 1.32 7.75 -2.39 -0.02 1.30 15 27 H 0.27 13.66 8.31 -92.71 -0.77 12.89 15 Total: -1.00 -63.64 258.96 -0.35 -63.99 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.39 Total: 13.35 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 4.21 Total: -27.10 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -2.46 Total: -109.78 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -4.18 Total: -69.42 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 16 Polarization: 87.24 SS G_CDS: -0.33 Total: 86.91 kcal Total: -63.64 -0.35 -63.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886022329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.227 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds