Wall clock time and date at job start Mon Mar 30 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.89726 * 2 1 4 4 H 1.08002 * 119.99512 * 120.52071 * 3 2 1 5 5 C 1.37878 * 120.00121 * 300.51842 * 3 2 1 6 6 N 1.31519 * 120.00009 * 359.97438 * 5 3 2 7 7 Si 1.86797 * 120.00109 * 180.02562 * 5 3 2 8 8 H 1.48502 * 109.47261 * 59.99664 * 7 5 3 9 9 H 1.48498 * 109.47219 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46884 * 300.00020 * 7 5 3 11 11 C 1.54421 * 109.83376 * 120.93874 * 2 1 3 12 12 C 1.55403 * 102.31881 * 140.86688 * 11 2 1 13 13 C 1.54416 * 100.85885 * 326.43533 * 12 11 2 14 14 C 1.52486 * 114.66935 * 164.37328 * 13 12 11 15 15 S 1.81509 * 89.76316 * 85.03994 * 14 13 12 16 16 O 1.42097 * 112.74159 * 280.00227 * 15 14 13 17 17 O 1.42097 * 112.82012 * 136.29337 * 15 14 13 18 18 C 1.52498 * 114.65151 * 267.14141 * 13 12 11 19 19 O 1.43035 * 105.88079 * 35.73468 * 13 12 11 20 20 H 1.09006 * 109.47040 * 179.48034 * 1 2 3 21 21 H 1.08994 * 109.47210 * 299.48365 * 1 2 3 22 22 H 1.09000 * 109.47414 * 59.48530 * 1 2 3 23 23 H 0.96992 * 120.00032 * 180.02562 * 6 5 3 24 24 H 1.09006 * 110.83727 * 259.07419 * 11 2 1 25 25 H 1.09000 * 110.83495 * 22.46102 * 11 2 1 26 26 H 1.09004 * 111.13868 * 84.33103 * 12 11 2 27 27 H 1.08997 * 111.14064 * 208.53362 * 12 11 2 28 28 H 1.08997 * 113.16724 * 200.26511 * 14 13 12 29 29 H 1.09007 * 113.16341 * 329.81774 * 14 13 12 30 30 H 1.08993 * 113.16639 * 30.17041 * 18 13 12 31 31 H 1.09002 * 113.16188 * 159.66678 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0429 1.4171 0.0000 4 1 2.6733 1.7631 0.8058 5 6 1.7073 2.2717 -1.0286 6 7 0.9401 1.8501 -2.0101 7 14 2.3437 4.0280 -1.0290 8 1 3.8286 4.0165 -1.0420 9 1 1.8430 4.7356 -2.2347 10 1 1.8648 4.7282 0.1899 11 6 2.0539 -0.7468 1.2459 12 6 3.2742 -1.5236 0.6781 13 6 2.7827 -1.8315 -0.7530 14 6 3.8770 -2.2658 -1.7221 15 16 3.7053 -3.9757 -1.1379 16 8 4.3811 -4.2070 0.0905 17 8 3.7075 -4.9229 -2.1972 18 6 2.0895 -3.1806 -0.9109 19 8 2.0164 -0.6934 -1.1571 20 1 -0.3633 -1.0277 -0.0093 21 1 -0.3633 0.5058 0.8945 22 1 -0.3634 0.5218 -0.8853 23 1 0.7043 2.4512 -2.7339 24 1 2.3671 -0.0427 2.0169 25 1 1.2998 -1.4324 1.6326 26 1 4.1659 -0.8968 0.6611 27 1 3.4516 -2.4413 1.2388 28 1 3.5980 -2.1400 -2.7682 29 1 4.8498 -1.8302 -1.4936 30 1 1.5744 -3.5064 -0.0074 31 1 1.4553 -3.2358 -1.7958 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886023800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:36 Heat of formation + Delta-G solvation = -85.493801 kcal Electronic energy + Delta-G solvation = -16999.950788 eV Core-core repulsion = 14182.048641 eV Total energy + Delta-G solvation = -2817.902147 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.26987 -37.12374 -35.93323 -34.73338 -32.24620 -31.16496 -28.51443 -26.48547 -25.25140 -22.98030 -20.21337 -19.37379 -18.48896 -17.04301 -16.32221 -16.13361 -15.85721 -14.79143 -14.36931 -14.18758 -13.72104 -13.31035 -12.89247 -12.40912 -12.20213 -12.10686 -12.05706 -11.60047 -11.33080 -11.12277 -10.91247 -10.77801 -10.52983 -10.45710 -10.33003 -10.09616 -9.99506 -9.66722 -9.23731 -8.56414 -8.08866 -6.03312 -4.20077 0.34541 2.16394 3.26595 3.32081 3.34038 3.83798 4.15701 4.35767 4.59701 4.85562 4.92938 5.27740 5.40486 5.48356 5.59637 5.79567 5.92981 6.08050 6.23405 6.30116 6.46062 6.66934 6.68733 6.82950 7.02590 7.21909 7.70215 7.99922 8.26449 8.46466 8.92015 9.51350 10.98629 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040058 B = 0.007395 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.823485 B = 3785.283723 C = 3875.356508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.224 3.776 3 C -0.534 4.534 4 H 0.060 0.940 5 C 0.081 3.919 6 N -0.860 5.860 7 Si 0.890 3.110 8 H -0.276 1.276 9 H -0.286 1.286 10 H -0.276 1.276 11 C -0.139 4.139 12 C -0.147 4.147 13 C 0.132 3.868 14 C -0.585 4.585 15 S 2.397 3.603 16 O -0.920 6.920 17 O -0.936 6.936 18 C -0.608 4.608 19 O -0.312 6.312 20 H 0.013 0.987 21 H 0.039 0.961 22 H 0.090 0.910 23 H 0.261 0.739 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -8.153 2.432 9.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.187 3.813 3 C -0.572 4.572 4 H 0.079 0.921 5 C -0.125 4.125 6 N -0.496 5.496 7 Si 0.717 3.283 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.202 1.202 11 C -0.177 4.177 12 C -0.185 4.185 13 C 0.087 3.913 14 C -0.715 4.715 15 S 2.580 3.420 16 O -0.917 6.917 17 O -0.934 6.934 18 C -0.738 4.738 19 O -0.230 6.230 20 H 0.032 0.968 21 H 0.058 0.942 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.466 -9.078 2.188 9.961 hybrid contribution -0.248 1.983 -0.064 1.999 sum 3.218 -7.095 2.124 8.076 Atomic orbital electron populations 1.21996 0.97095 0.97827 1.02942 1.19814 0.91160 0.90536 0.79773 1.21193 1.32995 0.94454 1.08539 0.92135 1.25016 0.94088 0.98274 0.95108 1.69934 1.34292 1.35380 1.10040 0.86714 0.79424 0.84642 0.77478 1.20178 1.21188 1.20151 1.23218 0.95702 0.98466 1.00319 1.23222 1.00254 1.01493 0.93482 1.21483 0.88965 0.88275 0.92559 1.31071 1.06771 1.22903 1.10713 1.08304 0.80637 0.77271 0.75828 1.93678 1.70556 1.85314 1.42149 1.93608 1.85442 1.59463 1.54846 1.31432 1.21367 1.09737 1.11312 1.88775 1.67004 1.34845 1.32393 0.96768 0.94233 0.89088 0.92879 0.90693 0.92611 0.89401 0.89858 0.83581 0.85869 0.86193 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.52 37.16 0.32 -2.99 16 2 C 0.22 5.36 0.82 -91.03 -0.07 5.29 16 3 C -0.53 -14.14 8.23 -34.44 -0.28 -14.42 16 4 H 0.06 1.57 7.48 -52.49 -0.39 1.17 16 5 C 0.08 2.17 5.26 -17.82 -0.09 2.08 16 6 N -0.86 -24.00 10.93 55.43 0.61 -23.39 16 7 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 C -0.14 -2.74 6.08 -24.71 -0.15 -2.89 16 12 C -0.15 -2.60 5.90 -24.71 -0.15 -2.75 16 13 C 0.13 2.43 1.33 -90.40 -0.12 2.31 16 14 C -0.58 -8.79 7.50 36.89 0.28 -8.51 16 15 S 2.40 31.73 7.44 -107.50 -0.80 30.93 16 16 O -0.92 -13.85 16.44 -57.31 -0.94 -14.79 16 17 O -0.94 -14.52 18.18 -57.31 -1.04 -15.56 16 18 C -0.61 -8.91 7.45 36.90 0.27 -8.63 16 19 O -0.31 -7.53 9.94 -35.23 -0.35 -7.88 16 20 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.07 1.44 7.60 -51.93 -0.39 1.04 16 25 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.08 1.27 6.54 -51.93 -0.34 0.93 16 28 H 0.15 2.14 8.14 -51.93 -0.42 1.72 16 29 H 0.12 1.65 8.13 -51.92 -0.42 1.23 16 30 H 0.12 1.54 8.13 -51.93 -0.42 1.12 16 31 H 0.15 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 265.70 15.07 4.00 4.00 Total: -1.00 -32.60 265.70 -7.49 -40.09 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.94 Total: 1.47 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 0.00 Total: -30.51 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.61 Total: -23.39 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -2.33 Total: -38.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 31.73 SS G_CDS: -0.80 Total: 30.93 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.60 -7.49 -40.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886023800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.407 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds