Wall clock time and date at job start Mon Mar 30 2020 03:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.89726 * 2 1 4 4 H 1.08002 * 119.99512 * 120.52071 * 3 2 1 5 5 C 1.37878 * 120.00121 * 300.51842 * 3 2 1 6 6 N 1.31519 * 120.00009 * 359.97438 * 5 3 2 7 7 Si 1.86797 * 120.00109 * 180.02562 * 5 3 2 8 8 H 1.48502 * 109.47261 * 59.99664 * 7 5 3 9 9 H 1.48498 * 109.47219 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46884 * 300.00020 * 7 5 3 11 11 C 1.54421 * 109.83376 * 120.93874 * 2 1 3 12 12 C 1.55403 * 102.31881 * 140.86688 * 11 2 1 13 13 C 1.54416 * 100.85885 * 326.43533 * 12 11 2 14 14 C 1.52486 * 114.66935 * 164.37328 * 13 12 11 15 15 S 1.81509 * 89.76316 * 85.03994 * 14 13 12 16 16 O 1.42097 * 112.74159 * 280.00227 * 15 14 13 17 17 O 1.42097 * 112.82012 * 136.29337 * 15 14 13 18 18 C 1.52498 * 114.65151 * 267.14141 * 13 12 11 19 19 O 1.43035 * 105.88079 * 35.73468 * 13 12 11 20 20 H 1.09006 * 109.47040 * 179.48034 * 1 2 3 21 21 H 1.08994 * 109.47210 * 299.48365 * 1 2 3 22 22 H 1.09000 * 109.47414 * 59.48530 * 1 2 3 23 23 H 0.96992 * 120.00032 * 180.02562 * 6 5 3 24 24 H 1.09006 * 110.83727 * 259.07419 * 11 2 1 25 25 H 1.09000 * 110.83495 * 22.46102 * 11 2 1 26 26 H 1.09004 * 111.13868 * 84.33103 * 12 11 2 27 27 H 1.08997 * 111.14064 * 208.53362 * 12 11 2 28 28 H 1.08997 * 113.16724 * 200.26511 * 14 13 12 29 29 H 1.09007 * 113.16341 * 329.81774 * 14 13 12 30 30 H 1.08993 * 113.16639 * 30.17041 * 18 13 12 31 31 H 1.09002 * 113.16188 * 159.66678 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0429 1.4171 0.0000 4 1 2.6733 1.7631 0.8058 5 6 1.7073 2.2717 -1.0286 6 7 0.9401 1.8501 -2.0101 7 14 2.3437 4.0280 -1.0290 8 1 3.8286 4.0165 -1.0420 9 1 1.8430 4.7356 -2.2347 10 1 1.8648 4.7282 0.1899 11 6 2.0539 -0.7468 1.2459 12 6 3.2742 -1.5236 0.6781 13 6 2.7827 -1.8315 -0.7530 14 6 3.8770 -2.2658 -1.7221 15 16 3.7053 -3.9757 -1.1379 16 8 4.3811 -4.2070 0.0905 17 8 3.7075 -4.9229 -2.1972 18 6 2.0895 -3.1806 -0.9109 19 8 2.0164 -0.6934 -1.1571 20 1 -0.3633 -1.0277 -0.0093 21 1 -0.3633 0.5058 0.8945 22 1 -0.3634 0.5218 -0.8853 23 1 0.7043 2.4512 -2.7339 24 1 2.3671 -0.0427 2.0169 25 1 1.2998 -1.4324 1.6326 26 1 4.1659 -0.8968 0.6611 27 1 3.4516 -2.4413 1.2388 28 1 3.5980 -2.1400 -2.7682 29 1 4.8498 -1.8302 -1.4936 30 1 1.5744 -3.5064 -0.0074 31 1 1.4553 -3.2358 -1.7958 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886023800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:35 Heat of formation + Delta-G solvation = -109.621544 kcal Electronic energy + Delta-G solvation = -17000.997045 eV Core-core repulsion = 14182.048641 eV Total energy + Delta-G solvation = -2818.948404 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77464 -38.34658 -37.15444 -36.28165 -34.08762 -32.81325 -30.16221 -27.68759 -27.19496 -24.53344 -21.75633 -20.95144 -19.66700 -18.80446 -17.57408 -17.39244 -17.01916 -16.65904 -15.88422 -15.70654 -15.13848 -14.81298 -14.55010 -13.82636 -13.67281 -13.37681 -13.34619 -13.18123 -13.05876 -12.76105 -12.71166 -12.37826 -12.22585 -12.03153 -11.89695 -11.57047 -11.31737 -11.23767 -10.96429 -10.57158 -9.83235 -8.03178 -6.25895 -0.80088 1.03795 1.41749 1.42273 1.49433 2.42703 2.70389 2.92560 3.18208 3.37106 3.53816 3.73543 3.91082 4.33044 4.35995 4.39947 4.58364 4.71807 4.88451 4.95154 5.01148 5.05644 5.09760 5.25685 5.33124 5.41407 5.67551 6.09783 6.34351 6.63923 7.08454 7.49605 8.97023 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040058 B = 0.007395 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.823485 B = 3785.283723 C = 3875.356508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.210 3.790 3 C -0.551 4.551 4 H 0.057 0.943 5 C 0.033 3.967 6 N -0.889 5.889 7 Si 0.946 3.054 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.269 1.269 11 C -0.138 4.138 12 C -0.143 4.143 13 C 0.103 3.897 14 C -0.596 4.596 15 S 2.466 3.534 16 O -0.927 6.927 17 O -0.950 6.950 18 C -0.609 4.609 19 O -0.350 6.350 20 H 0.032 0.968 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.258 0.742 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 -9.340 3.253 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.173 3.827 3 C -0.589 4.589 4 H 0.075 0.925 5 C -0.170 4.170 6 N -0.527 5.527 7 Si 0.772 3.228 8 H -0.200 1.200 9 H -0.212 1.212 10 H -0.194 1.194 11 C -0.175 4.175 12 C -0.181 4.181 13 C 0.060 3.940 14 C -0.724 4.724 15 S 2.647 3.353 16 O -0.924 6.924 17 O -0.947 6.947 18 C -0.738 4.738 19 O -0.269 6.269 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.130 0.870 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.269 -10.255 3.018 11.511 hybrid contribution -0.480 2.287 -0.306 2.357 sum 3.790 -7.967 2.712 9.230 Atomic orbital electron populations 1.21903 0.97523 0.98483 1.01498 1.19861 0.91087 0.90123 0.81664 1.21616 1.32560 0.96452 1.08225 0.92469 1.25717 0.94481 1.01728 0.95034 1.70083 1.35653 1.36320 1.10604 0.85821 0.78763 0.80684 0.77521 1.20001 1.21207 1.19387 1.23159 0.97029 0.98757 0.98582 1.23255 0.99142 1.02365 0.93323 1.21930 0.90267 0.88195 0.93653 1.31175 1.06475 1.24597 1.10158 1.06514 0.78988 0.75362 0.74484 1.93659 1.70772 1.85225 1.42791 1.93589 1.85542 1.59813 1.55762 1.31399 1.22299 1.07485 1.12626 1.88670 1.68170 1.37128 1.32923 0.94905 0.93860 0.92299 0.93301 0.90779 0.90525 0.89903 0.86994 0.83658 0.84617 0.84095 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 8.52 71.98 0.61 -5.79 16 2 C 0.21 10.00 0.82 -11.06 -0.01 9.99 16 3 C -0.55 -29.36 8.23 25.60 0.21 -29.15 16 4 H 0.06 2.97 7.48 -2.91 -0.02 2.95 16 5 C 0.03 1.78 5.26 84.65 0.45 2.23 16 6 N -0.89 -50.78 10.93 21.45 0.23 -50.55 16 7 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 8 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 9 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 C -0.14 -5.19 6.08 31.90 0.19 -5.00 16 12 C -0.14 -4.77 5.90 31.90 0.19 -4.58 16 13 C 0.10 3.64 1.33 -10.65 -0.01 3.63 16 14 C -0.60 -16.90 7.50 71.81 0.54 -16.36 16 15 S 2.47 58.04 7.44 -56.49 -0.42 57.62 16 16 O -0.93 -24.58 16.44 -127.87 -2.10 -26.68 16 17 O -0.95 -26.74 18.18 -127.87 -2.32 -29.06 16 18 C -0.61 -16.30 7.45 71.82 0.53 -15.76 16 19 O -0.35 -16.88 9.94 -148.98 -1.48 -18.36 16 20 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 21 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.06 3.14 6.06 -2.39 -0.01 3.13 16 23 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 24 H 0.07 2.75 7.60 -2.38 -0.02 2.73 16 25 H 0.08 2.52 7.85 -2.39 -0.02 2.50 16 26 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 27 H 0.11 3.03 6.54 -2.39 -0.02 3.01 16 28 H 0.15 4.13 8.14 -2.39 -0.02 4.11 16 29 H 0.14 3.42 8.13 -2.38 -0.02 3.40 16 30 H 0.14 3.13 8.13 -2.39 -0.02 3.11 16 31 H 0.15 3.93 8.14 -2.39 -0.02 3.91 16 Total: -1.00 -69.18 265.70 -0.24 -69.42 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.13 Total: 13.54 kcal Atomic # 6 Polarization: -63.51 SS G_CDS: 2.70 Total: -60.81 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.23 Total: -50.55 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: -5.91 Total: -74.10 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 58.04 SS G_CDS: -0.42 Total: 57.62 kcal Total: -69.18 -0.24 -69.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886023800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.204 kcal (2) G-P(sol) polarization free energy of solvation -69.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds