Wall clock time and date at job start Mon Mar 30 2020 04:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48503 * 109.47136 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47144 * 29.99859 * 3 2 1 6 6 H 1.48505 * 109.47450 * 149.99784 * 3 2 1 7 7 C 1.37885 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99379 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00114 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.47116 * 300.00422 * 9 7 2 11 11 O 1.42901 * 109.46734 * 60.00335 * 9 7 2 12 12 C 1.50702 * 109.47092 * 180.02562 * 9 7 2 13 13 C 1.38340 * 119.93800 * 280.28032 * 12 9 7 14 14 C 1.38294 * 120.23424 * 180.23769 * 13 12 9 15 15 C 1.38053 * 120.11863 * 359.47940 * 14 13 12 16 16 C 1.39287 * 119.87689 * 0.26032 * 15 14 13 17 17 C 1.48461 * 120.11667 * 179.97438 * 16 15 14 18 18 N 1.34047 * 126.67797 * 179.68395 * 17 16 15 19 19 N 1.28981 * 107.26768 * 179.83724 * 18 17 16 20 20 N 1.28730 * 108.94660 * 0.43994 * 19 18 17 21 21 H 0.97001 * 125.33968 * 179.69913 * 20 19 18 22 22 N 1.28872 * 109.31704 * 359.71964 * 20 19 18 23 23 C 1.38001 * 119.94359 * 99.99758 * 12 9 7 24 24 H 0.97005 * 120.00350 * 0.02562 * 1 2 3 25 25 H 0.96694 * 114.00164 * 60.00193 * 11 9 7 26 26 H 1.08001 * 119.88292 * 359.97438 * 13 12 9 27 27 H 1.08002 * 119.94476 * 179.76592 * 14 13 12 28 28 H 1.07999 * 120.06154 * 180.27830 * 15 14 13 29 29 H 1.08003 * 120.05855 * 0.04726 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6804 -0.8888 11 8 3.9873 -0.5202 1.1680 12 6 4.0139 -2.6149 0.0010 13 6 4.0418 -3.3374 1.1804 14 6 4.5062 -4.6400 1.1882 15 6 4.9345 -5.2298 0.0158 16 6 4.9034 -4.5086 -1.1754 17 6 5.3632 -5.1374 -2.4392 18 7 5.3848 -4.5709 -3.6538 19 7 5.8551 -5.4461 -4.4763 20 7 6.1164 -6.5286 -3.8304 21 1 6.4763 -7.3410 -4.2193 22 7 5.8243 -6.3636 -2.5861 23 6 4.4397 -3.1949 -1.1766 24 1 -0.4851 0.8401 -0.0004 25 1 3.7017 -0.9236 1.9991 26 1 3.7038 -2.8811 2.0991 27 1 4.5295 -5.1985 2.1123 28 1 5.2928 -6.2487 0.0222 29 1 4.4138 -2.6312 -2.0975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535747318.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:28 Heat of formation + Delta-G solvation = 101.337044 kcal Electronic energy + Delta-G solvation = -16754.799968 eV Core-core repulsion = 13874.140965 eV Total energy + Delta-G solvation = -2880.659002 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.38262 -39.04275 -36.01446 -34.29788 -33.36722 -32.30287 -30.97564 -30.17090 -27.08254 -24.68707 -24.28094 -22.85766 -21.71010 -20.09044 -19.06914 -17.51062 -17.07811 -16.51467 -15.31293 -14.99214 -14.70412 -14.39849 -13.95786 -13.26537 -12.91878 -12.74332 -12.69747 -12.25460 -11.87249 -11.51435 -11.32189 -11.13467 -11.04252 -10.86272 -10.80853 -10.44193 -10.06098 -9.20765 -8.72542 -8.52271 -8.35306 -8.04049 -6.15396 -4.27920 0.91667 1.33869 1.84267 2.25808 2.60061 3.38851 3.48378 3.72910 3.82051 4.24193 4.31157 4.51040 5.16353 5.29977 5.30262 5.37317 5.52585 5.64160 5.79123 5.89088 6.00729 6.21906 6.37159 6.43086 6.75075 6.78055 6.85739 7.30517 7.40855 7.48748 8.21074 8.25250 8.77062 8.95116 9.47012 10.94598 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.030880 B = 0.005915 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.521562 B = 4732.360821 C = 5182.797974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.086 3.914 3 Si 0.868 3.132 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.217 1.217 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.224 3.776 10 H 0.069 0.931 11 O -0.575 6.575 12 C -0.065 4.065 13 C -0.087 4.087 14 C -0.126 4.126 15 C -0.099 4.099 16 C -0.031 4.031 17 C 0.234 3.766 18 N -0.266 5.266 19 N -0.055 5.055 20 N -0.234 5.234 21 H 0.472 0.528 22 N -0.303 5.303 23 C -0.072 4.072 24 H 0.266 0.734 25 H 0.356 0.644 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.953 -12.141 -1.938 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.119 4.119 3 Si 0.694 3.306 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.139 1.139 7 C -0.595 4.595 8 H 0.093 0.907 9 C 0.167 3.833 10 H 0.087 0.913 11 O -0.382 6.382 12 C -0.066 4.066 13 C -0.106 4.106 14 C -0.144 4.144 15 C -0.119 4.119 16 C -0.035 4.035 17 C -0.045 4.045 18 N -0.139 5.139 19 N -0.051 5.051 20 N -0.080 5.080 21 H 0.326 0.674 22 N -0.154 5.154 23 C -0.092 4.092 24 H 0.076 0.924 25 H 0.203 0.797 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.205 -11.673 -3.053 17.163 hybrid contribution -0.043 -0.218 0.381 0.441 sum 12.162 -11.892 -2.672 17.218 Atomic orbital electron populations 1.69942 1.06758 1.27590 1.48177 1.24993 0.94638 0.99887 0.92425 0.87064 0.83038 0.81838 0.78639 1.21136 1.22099 1.13899 1.21375 0.88713 0.95036 1.54406 0.90664 1.18899 0.94140 0.83944 0.86327 0.91349 1.86743 1.77936 1.57135 1.16358 1.20915 0.94170 0.99252 0.92223 1.21120 0.97149 0.93798 0.98560 1.20968 1.00449 0.95481 0.97526 1.20931 1.00203 0.99388 0.91393 1.17190 1.04828 0.94344 0.87118 1.23848 0.98893 0.87156 0.94621 1.76145 1.16144 1.22379 0.99199 1.78894 1.12549 0.91189 1.22422 1.47694 1.41982 1.14734 1.03551 0.67415 1.74915 1.20187 1.20065 1.00251 1.21035 0.96227 0.92953 0.99007 0.92427 0.79659 0.85644 0.85873 0.85838 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.96 55.43 0.77 -25.89 15 2 C 0.09 2.41 5.47 -17.82 -0.10 2.32 15 3 Si 0.87 21.28 26.99 -169.99 -4.59 16.69 15 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 6 H -0.22 -5.15 5.31 56.52 0.30 -4.85 15 7 C -0.56 -15.12 9.32 -34.44 -0.32 -15.44 15 8 H 0.08 2.23 7.98 -52.49 -0.42 1.82 15 9 C 0.22 5.12 2.55 -29.03 -0.07 5.05 15 10 H 0.07 1.60 7.43 -51.93 -0.39 1.21 15 11 O -0.58 -12.53 10.00 -35.23 -0.35 -12.89 15 12 C -0.07 -1.29 4.91 -104.67 -0.51 -1.80 15 13 C -0.09 -1.49 9.31 -39.52 -0.37 -1.86 15 14 C -0.13 -1.84 10.03 -39.63 -0.40 -2.24 15 15 C -0.10 -1.47 9.70 -39.26 -0.38 -1.85 15 16 C -0.03 -0.53 5.88 -104.89 -0.62 -1.14 15 17 C 0.23 3.73 7.94 -156.30 -1.24 2.48 15 18 N -0.27 -4.38 12.23 32.16 0.39 -3.98 15 19 N -0.06 -0.74 13.47 60.35 0.81 0.07 15 20 N -0.23 -2.40 7.90 60.35 0.48 -1.93 15 21 H 0.47 2.26 8.96 -340.37 -3.05 -0.79 15 22 N -0.30 -3.99 12.08 32.17 0.39 -3.60 15 23 C -0.07 -1.35 9.32 -39.27 -0.37 -1.71 15 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 25 H 0.36 6.69 7.50 45.56 0.34 7.03 15 26 H 0.13 1.96 6.79 -52.49 -0.36 1.61 15 27 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.12 1.56 7.88 -52.49 -0.41 1.15 15 29 H 0.13 2.49 7.86 -52.48 -0.41 2.08 15 LS Contribution 261.34 15.07 3.94 3.94 Total: -1.00 -32.95 261.34 -6.89 -39.84 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.36 Total: 3.95 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -4.37 Total: -16.20 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 2.85 Total: -35.33 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.35 Total: -12.89 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.95 -6.89 -39.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535747318.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.177 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds