Wall clock time and date at job start Mon Mar 30 2020 04:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48503 * 109.47136 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47144 * 29.99859 * 3 2 1 6 6 H 1.48505 * 109.47450 * 149.99784 * 3 2 1 7 7 C 1.37885 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99379 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00114 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.47116 * 300.00422 * 9 7 2 11 11 O 1.42901 * 109.46734 * 60.00335 * 9 7 2 12 12 C 1.50702 * 109.47092 * 180.02562 * 9 7 2 13 13 C 1.38340 * 119.93800 * 280.28032 * 12 9 7 14 14 C 1.38294 * 120.23424 * 180.23769 * 13 12 9 15 15 C 1.38053 * 120.11863 * 359.47940 * 14 13 12 16 16 C 1.39287 * 119.87689 * 0.26032 * 15 14 13 17 17 C 1.48461 * 120.11667 * 179.97438 * 16 15 14 18 18 N 1.34047 * 126.67797 * 179.68395 * 17 16 15 19 19 N 1.28981 * 107.26768 * 179.83724 * 18 17 16 20 20 N 1.28730 * 108.94660 * 0.43994 * 19 18 17 21 21 H 0.97001 * 125.33968 * 179.69913 * 20 19 18 22 22 N 1.28872 * 109.31704 * 359.71964 * 20 19 18 23 23 C 1.38001 * 119.94359 * 99.99758 * 12 9 7 24 24 H 0.97005 * 120.00350 * 0.02562 * 1 2 3 25 25 H 0.96694 * 114.00164 * 60.00193 * 11 9 7 26 26 H 1.08001 * 119.88292 * 359.97438 * 13 12 9 27 27 H 1.08002 * 119.94476 * 179.76592 * 14 13 12 28 28 H 1.07999 * 120.06154 * 180.27830 * 15 14 13 29 29 H 1.08003 * 120.05855 * 0.04726 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6804 -0.8888 11 8 3.9873 -0.5202 1.1680 12 6 4.0139 -2.6149 0.0010 13 6 4.0418 -3.3374 1.1804 14 6 4.5062 -4.6400 1.1882 15 6 4.9345 -5.2298 0.0158 16 6 4.9034 -4.5086 -1.1754 17 6 5.3632 -5.1374 -2.4392 18 7 5.3848 -4.5709 -3.6538 19 7 5.8551 -5.4461 -4.4763 20 7 6.1164 -6.5286 -3.8304 21 1 6.4763 -7.3410 -4.2193 22 7 5.8243 -6.3636 -2.5861 23 6 4.4397 -3.1949 -1.1766 24 1 -0.4851 0.8401 -0.0004 25 1 3.7017 -0.9236 1.9991 26 1 3.7038 -2.8811 2.0991 27 1 4.5295 -5.1985 2.1123 28 1 5.2928 -6.2487 0.0222 29 1 4.4138 -2.6312 -2.0975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535747318.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:28 Heat of formation + Delta-G solvation = 76.012760 kcal Electronic energy + Delta-G solvation = -16755.898111 eV Core-core repulsion = 13874.140965 eV Total energy + Delta-G solvation = -2881.757146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.45772 -40.40753 -37.68655 -35.40342 -34.53224 -34.42075 -32.40807 -31.41497 -28.94999 -25.85399 -25.46816 -24.55790 -22.95834 -21.52678 -20.12644 -19.45879 -18.13839 -17.99802 -16.86395 -16.58341 -16.29114 -15.94187 -15.19986 -14.85590 -14.52975 -14.30421 -14.12457 -13.68152 -13.36035 -13.08570 -12.87977 -12.59545 -12.38910 -12.22663 -12.17418 -11.83924 -11.72141 -11.19615 -10.82190 -10.31138 -9.67133 -9.45056 -8.33493 -6.48792 -0.23692 0.19919 0.53382 1.36779 1.43009 1.43869 1.47942 1.76888 2.45263 2.67753 2.91857 3.04718 3.18410 4.00347 4.05791 4.10692 4.18418 4.30800 4.43618 4.54744 4.68598 4.91616 5.12478 5.20837 5.42294 5.49588 5.54340 5.64966 5.85743 6.03338 6.12752 6.63675 7.12040 7.15970 7.32901 8.80258 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.030880 B = 0.005915 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.521562 B = 4732.360821 C = 5182.797974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.031 3.969 3 Si 0.934 3.066 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.036 0.964 9 C 0.233 3.767 10 H 0.059 0.941 11 O -0.576 6.576 12 C -0.093 4.093 13 C -0.097 4.097 14 C -0.113 4.113 15 C -0.088 4.088 16 C -0.036 4.036 17 C 0.216 3.784 18 N -0.302 5.302 19 N -0.058 5.058 20 N -0.198 5.198 21 H 0.495 0.505 22 N -0.289 5.289 23 C -0.091 4.091 24 H 0.268 0.732 25 H 0.371 0.629 26 H 0.136 0.864 27 H 0.165 0.835 28 H 0.153 0.847 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.011 -13.832 -1.256 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.169 4.169 3 Si 0.758 3.242 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.124 1.124 7 C -0.591 4.591 8 H 0.055 0.945 9 C 0.176 3.824 10 H 0.076 0.924 11 O -0.384 6.384 12 C -0.094 4.094 13 C -0.116 4.116 14 C -0.131 4.131 15 C -0.108 4.108 16 C -0.039 4.039 17 C -0.064 4.064 18 N -0.174 5.174 19 N -0.053 5.053 20 N -0.049 5.049 21 H 0.355 0.645 22 N -0.142 5.142 23 C -0.111 4.111 24 H 0.077 0.923 25 H 0.220 0.780 26 H 0.154 0.846 27 H 0.182 0.818 28 H 0.171 0.829 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.286 -13.391 -2.382 19.725 hybrid contribution -0.631 0.069 0.127 0.647 sum 13.656 -13.322 -2.255 19.211 Atomic orbital electron populations 1.70069 1.08463 1.28466 1.50567 1.25842 0.95261 1.03472 0.92347 0.86055 0.82130 0.77524 0.78478 1.21291 1.22137 1.12382 1.21614 0.91220 0.93284 1.52972 0.94534 1.18557 0.91218 0.86345 0.86319 0.92365 1.86650 1.77589 1.57404 1.16770 1.20651 0.96732 0.98057 0.93946 1.21330 0.97356 0.94983 0.97886 1.21374 0.98239 0.94357 0.99086 1.21311 0.98633 1.00339 0.90525 1.17304 1.04404 0.93684 0.88498 1.23756 1.00241 0.88036 0.94353 1.76137 1.17589 1.23837 0.99874 1.78835 1.12725 0.91635 1.22085 1.47766 1.39606 1.14913 1.02641 0.64533 1.74854 1.19474 1.18705 1.01164 1.20949 0.97719 0.94227 0.98200 0.92345 0.78038 0.84600 0.81796 0.82926 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.96 21.45 0.30 -57.66 15 2 C 0.03 1.77 5.47 84.66 0.46 2.23 15 3 Si 0.93 44.69 26.99 68.60 1.85 46.55 15 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 15 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 15 6 H -0.20 -9.11 5.31 99.48 0.53 -8.59 15 7 C -0.55 -30.86 9.32 25.60 0.24 -30.62 15 8 H 0.04 2.27 7.98 -2.91 -0.02 2.24 15 9 C 0.23 10.77 2.55 29.10 0.07 10.84 15 10 H 0.06 2.78 7.43 -2.39 -0.02 2.76 15 11 O -0.58 -24.52 10.00 -148.98 -1.49 -26.00 15 12 C -0.09 -3.70 4.91 -19.90 -0.10 -3.80 15 13 C -0.10 -3.16 9.31 22.31 0.21 -2.95 15 14 C -0.11 -2.92 10.03 22.24 0.22 -2.69 15 15 C -0.09 -2.34 9.70 22.48 0.22 -2.12 15 16 C -0.04 -1.15 5.88 -20.04 -0.12 -1.27 15 17 C 0.22 6.57 7.94 137.38 1.09 7.66 15 18 N -0.30 -9.80 12.23 -52.18 -0.64 -10.44 15 19 N -0.06 -1.47 13.47 37.02 0.50 -0.97 15 20 N -0.20 -3.52 7.90 37.02 0.29 -3.23 15 21 H 0.50 3.07 8.96 -347.54 -3.12 -0.05 15 22 N -0.29 -6.83 12.08 -52.13 -0.63 -7.46 15 23 C -0.09 -3.44 9.32 22.47 0.21 -3.23 15 24 H 0.27 15.55 8.31 -92.70 -0.77 14.78 15 25 H 0.37 13.45 7.50 -74.06 -0.56 12.89 15 26 H 0.14 4.02 6.79 -2.91 -0.02 4.00 15 27 H 0.16 2.91 8.06 -2.91 -0.02 2.88 15 28 H 0.15 3.17 7.88 -2.91 -0.02 3.14 15 29 H 0.12 4.67 7.86 -2.91 -0.02 4.64 15 Total: -1.00 -72.77 261.34 0.06 -72.71 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -2.63 Total: 12.46 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 2.51 Total: -25.96 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -0.18 Total: -79.75 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -1.49 Total: -26.00 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.85 Total: 46.55 kcal Total: -72.77 0.06 -72.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535747318.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.721 kcal (2) G-P(sol) polarization free energy of solvation -72.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds