Wall clock time and date at job start Mon Mar 30 2020 04:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 11 11 O 1.42900 * 109.46751 * 300.00173 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38797 * 120.35243 * 264.99447 * 12 9 7 14 14 C 1.38418 * 118.48252 * 180.02562 * 13 12 9 15 15 C 1.38941 * 119.10787 * 0.02562 * 14 13 12 16 16 N 1.39846 * 119.68759 * 179.97438 * 15 14 13 17 17 C 1.34809 * 126.84728 * 179.71292 * 16 15 14 18 18 N 1.30811 * 108.01728 * 179.82876 * 17 16 15 19 19 C 1.33297 * 109.85173 * 0.43937 * 18 17 16 20 20 N 1.30721 * 109.01131 * 359.72283 * 19 18 17 21 21 N 1.32300 * 120.62309 * 359.97438 * 15 14 13 22 22 C 1.31892 * 121.65374 * 359.70485 * 21 15 14 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 0.96700 * 114.00022 * 299.99744 * 11 9 7 25 25 H 1.07997 * 120.75947 * 359.97438 * 13 12 9 26 26 H 1.08001 * 120.44432 * 180.02562 * 14 13 12 27 27 H 1.07994 * 125.99006 * 359.97438 * 17 16 15 28 28 H 1.08000 * 125.49555 * 179.72292 * 19 18 17 29 29 H 1.08005 * 119.57984 * 180.30989 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1665 12 6 2.2305 -3.6445 -0.0005 13 6 2.6069 -4.2455 -1.1937 14 6 3.5086 -5.2947 -1.1487 15 6 4.0030 -5.7087 0.0821 16 7 4.9141 -6.7679 0.1417 17 6 5.4861 -7.2809 1.2494 18 7 6.2722 -8.2599 0.8825 19 6 6.2373 -8.3960 -0.4430 20 7 5.4202 -7.5055 -0.9411 21 7 3.6199 -5.1103 1.1981 22 6 2.7671 -4.1041 1.1864 23 1 -0.4849 -0.8401 0.0004 24 1 0.9224 -2.5299 1.9975 25 1 2.2048 -3.9029 -2.1356 26 1 3.8236 -5.7850 -2.0580 27 1 5.3220 -6.9442 2.2624 28 1 6.7942 -9.1246 -1.0135 29 1 2.4812 -3.6368 2.1171 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535775477.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:10 Heat of formation + Delta-G solvation = 78.913572 kcal Electronic energy + Delta-G solvation = -16730.057991 eV Core-core repulsion = 13848.426634 eV Total energy + Delta-G solvation = -2881.631357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.35044 -40.05957 -36.49933 -33.94110 -32.60045 -32.32250 -31.30158 -30.08884 -26.60503 -24.28292 -23.95341 -22.43503 -21.56335 -20.98857 -18.58640 -17.53407 -16.65908 -16.01666 -15.98534 -15.42574 -14.45319 -14.25963 -13.97302 -13.86991 -13.59730 -13.16698 -12.95197 -12.41726 -12.26327 -12.15219 -10.90171 -10.83593 -10.51527 -10.26795 -10.24605 -10.04568 -9.98233 -9.71191 -9.36908 -8.73895 -8.57269 -8.05229 -6.55717 -4.43759 0.72639 1.36895 1.96275 2.00959 2.79380 3.32382 3.34807 3.50861 3.95995 4.16774 4.33289 4.36754 4.52271 5.03433 5.07844 5.12984 5.26754 5.34578 5.53251 5.74152 5.83151 5.95959 6.19703 6.27680 6.42061 6.58071 6.98702 7.11902 7.65435 7.69716 8.04472 8.13130 8.63117 8.76192 9.41274 10.83165 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043921 B = 0.004965 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.361422 B = 5638.653193 C = 5765.378849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.039 3.961 3 Si 1.070 2.930 4 H -0.285 1.285 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.647 4.647 8 H 0.053 0.947 9 C 0.247 3.753 10 H 0.068 0.932 11 O -0.575 6.575 12 C -0.107 4.107 13 C -0.060 4.060 14 C -0.148 4.148 15 C 0.318 3.682 16 N -0.319 5.319 17 C 0.285 3.715 18 N -0.548 5.548 19 C 0.203 3.797 20 N -0.312 5.312 21 N -0.498 5.498 22 C 0.129 3.871 23 H 0.285 0.715 24 H 0.356 0.644 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.225 0.775 28 H 0.223 0.777 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -10.611 0.058 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.171 4.171 3 Si 0.898 3.102 4 H -0.211 1.211 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.684 4.684 8 H 0.071 0.929 9 C 0.189 3.811 10 H 0.085 0.915 11 O -0.380 6.380 12 C -0.110 4.110 13 C -0.087 4.087 14 C -0.171 4.171 15 C 0.092 3.908 16 N -0.104 5.104 17 C -0.011 4.011 18 N -0.275 5.275 19 C -0.100 4.100 20 N -0.139 5.139 21 N -0.210 5.210 22 C -0.029 4.029 23 H 0.097 0.903 24 H 0.203 0.797 25 H 0.161 0.839 26 H 0.160 0.840 27 H 0.242 0.758 28 H 0.239 0.761 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.402 -9.454 -0.161 12.008 hybrid contribution 0.430 -1.251 -0.267 1.350 sum 7.831 -10.706 -0.428 13.271 Atomic orbital electron populations 1.70632 1.06909 1.32402 1.41865 1.25854 0.96401 1.02488 0.92348 0.83531 0.74714 0.74904 0.77056 1.21144 1.20745 1.21423 1.22318 0.94504 0.91170 1.60389 0.92856 1.18665 0.86989 0.88971 0.86459 0.91466 1.86570 1.38944 1.96365 1.16099 1.22301 0.98309 0.97149 0.93258 1.21428 0.94889 0.92980 0.99354 1.21549 0.99233 0.99071 0.97229 1.17547 0.92816 0.89394 0.91068 1.47431 1.32274 1.24847 1.05822 1.26330 0.89586 0.89931 0.95231 1.70682 1.24108 1.19668 1.13017 1.26181 0.96289 0.97383 0.90122 1.78122 1.17049 1.09680 1.09060 1.66728 1.14881 1.10498 1.28889 1.22205 0.91213 0.90590 0.98892 0.90276 0.79736 0.83896 0.84021 0.75845 0.76076 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.08 13.53 55.43 0.75 -24.33 15 2 C 0.04 1.03 5.40 -17.82 -0.10 0.94 15 3 Si 1.07 23.52 29.90 -169.99 -5.08 18.44 15 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.29 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.65 -16.39 8.75 -34.44 -0.30 -16.69 15 8 H 0.05 1.37 7.74 -52.48 -0.41 0.96 15 9 C 0.25 5.57 2.69 -29.03 -0.08 5.49 15 10 H 0.07 1.62 7.93 -51.93 -0.41 1.20 15 11 O -0.57 -12.87 11.82 -35.23 -0.42 -13.29 15 12 C -0.11 -2.04 4.95 -104.46 -0.52 -2.56 15 13 C -0.06 -1.03 9.83 -39.31 -0.39 -1.42 15 14 C -0.15 -2.40 9.72 -39.25 -0.38 -2.78 15 15 C 0.32 5.31 7.56 -154.35 -1.17 4.14 15 16 N -0.32 -4.93 3.81 -13.34 -0.05 -4.99 15 17 C 0.29 3.88 12.26 -90.33 -1.11 2.77 15 18 N -0.55 -7.43 11.19 -15.73 -0.18 -7.60 15 19 C 0.20 2.49 13.03 -91.76 -1.20 1.29 15 20 N -0.31 -4.58 12.02 29.30 0.35 -4.23 15 21 N -0.50 -8.37 9.90 -12.28 -0.12 -8.49 15 22 C 0.13 2.24 10.49 -17.57 -0.18 2.06 15 23 H 0.29 8.17 6.47 -40.82 -0.26 7.90 15 24 H 0.36 6.87 7.41 45.56 0.34 7.21 15 25 H 0.14 2.21 8.06 -52.49 -0.42 1.78 15 26 H 0.14 2.07 7.73 -52.49 -0.41 1.67 15 27 H 0.23 2.42 8.06 -52.49 -0.42 2.00 15 28 H 0.22 1.68 8.06 -52.49 -0.42 1.26 15 29 H 0.17 2.56 6.63 -52.48 -0.35 2.21 15 LS Contribution 266.24 15.07 4.01 4.01 Total: -1.00 -30.49 266.24 -7.71 -38.20 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -1.56 Total: 9.03 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -5.42 Total: -6.76 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.75 Total: -49.63 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.42 Total: -13.29 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.08 Total: 18.44 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.49 -7.71 -38.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535775477.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.114 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds