Wall clock time and date at job start Mon Mar 30 2020 04:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 11 11 O 1.42900 * 109.46751 * 300.00173 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38797 * 120.35243 * 264.99447 * 12 9 7 14 14 C 1.38418 * 118.48252 * 180.02562 * 13 12 9 15 15 C 1.38941 * 119.10787 * 0.02562 * 14 13 12 16 16 N 1.39846 * 119.68759 * 179.97438 * 15 14 13 17 17 C 1.34809 * 126.84728 * 179.71292 * 16 15 14 18 18 N 1.30811 * 108.01728 * 179.82876 * 17 16 15 19 19 C 1.33297 * 109.85173 * 0.43937 * 18 17 16 20 20 N 1.30721 * 109.01131 * 359.72283 * 19 18 17 21 21 N 1.32300 * 120.62309 * 359.97438 * 15 14 13 22 22 C 1.31892 * 121.65374 * 359.70485 * 21 15 14 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 0.96700 * 114.00022 * 299.99744 * 11 9 7 25 25 H 1.07997 * 120.75947 * 359.97438 * 13 12 9 26 26 H 1.08001 * 120.44432 * 180.02562 * 14 13 12 27 27 H 1.07994 * 125.99006 * 359.97438 * 17 16 15 28 28 H 1.08000 * 125.49555 * 179.72292 * 19 18 17 29 29 H 1.08005 * 119.57984 * 180.30989 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1665 12 6 2.2305 -3.6445 -0.0005 13 6 2.6069 -4.2455 -1.1937 14 6 3.5086 -5.2947 -1.1487 15 6 4.0030 -5.7087 0.0821 16 7 4.9141 -6.7679 0.1417 17 6 5.4861 -7.2809 1.2494 18 7 6.2722 -8.2599 0.8825 19 6 6.2373 -8.3960 -0.4430 20 7 5.4202 -7.5055 -0.9411 21 7 3.6199 -5.1103 1.1981 22 6 2.7671 -4.1041 1.1864 23 1 -0.4849 -0.8401 0.0004 24 1 0.9224 -2.5299 1.9975 25 1 2.2048 -3.9029 -2.1356 26 1 3.8236 -5.7850 -2.0580 27 1 5.3220 -6.9442 2.2624 28 1 6.7942 -9.1246 -1.0135 29 1 2.4812 -3.6368 2.1171 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535775477.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:10 Heat of formation + Delta-G solvation = 60.573805 kcal Electronic energy + Delta-G solvation = -16730.853263 eV Core-core repulsion = 13848.426634 eV Total energy + Delta-G solvation = -2882.426629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.42199 -41.39793 -38.20020 -35.20734 -34.37660 -33.83164 -32.37555 -31.47352 -28.28646 -25.76586 -25.32244 -23.87764 -22.68433 -22.33335 -19.76793 -19.45536 -18.14526 -17.49029 -17.12134 -16.51060 -15.94630 -15.59782 -15.42986 -15.14801 -14.98481 -14.89829 -14.36169 -14.19906 -13.72084 -13.34944 -12.63487 -12.35342 -12.10595 -11.94235 -11.66950 -11.33004 -11.07359 -11.03558 -10.81556 -10.65452 -10.31946 -9.53992 -8.61657 -6.50676 -0.50930 0.04569 0.81355 0.82879 1.55874 1.61809 1.79794 1.80076 2.51753 2.65146 3.07996 3.13684 3.29056 3.44139 3.76366 3.87581 3.90944 3.99742 4.16143 4.24030 4.52853 4.77532 4.90973 5.02858 5.23458 5.36425 5.44152 5.73179 5.78492 6.08943 6.46135 6.53888 6.91918 7.07532 7.43084 8.74699 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043921 B = 0.004965 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.361422 B = 5638.653193 C = 5765.378849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 1.114 2.886 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.646 4.646 8 H 0.048 0.952 9 C 0.252 3.748 10 H 0.044 0.956 11 O -0.585 6.585 12 C -0.132 4.132 13 C -0.058 4.058 14 C -0.148 4.148 15 C 0.323 3.677 16 N -0.336 5.336 17 C 0.287 3.713 18 N -0.558 5.558 19 C 0.214 3.786 20 N -0.338 5.338 21 N -0.497 5.497 22 C 0.131 3.869 23 H 0.272 0.728 24 H 0.369 0.631 25 H 0.154 0.846 26 H 0.157 0.843 27 H 0.246 0.754 28 H 0.264 0.736 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 -11.596 0.240 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.212 4.212 3 Si 0.936 3.064 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.066 0.934 9 C 0.194 3.806 10 H 0.061 0.939 11 O -0.392 6.392 12 C -0.135 4.135 13 C -0.084 4.084 14 C -0.170 4.170 15 C 0.095 3.905 16 N -0.121 5.121 17 C -0.008 4.008 18 N -0.284 5.284 19 C -0.088 4.088 20 N -0.164 5.164 21 N -0.210 5.210 22 C -0.026 4.026 23 H 0.082 0.918 24 H 0.217 0.783 25 H 0.171 0.829 26 H 0.175 0.825 27 H 0.262 0.738 28 H 0.280 0.720 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.235 -10.469 0.029 13.960 hybrid contribution -0.023 -1.141 -0.313 1.184 sum 9.212 -11.610 -0.285 14.824 Atomic orbital electron populations 1.70757 1.07917 1.31552 1.44851 1.27139 0.96411 1.06007 0.91626 0.82962 0.74052 0.71571 0.77794 1.19756 1.21039 1.20030 1.22595 0.94345 0.92550 1.58884 0.93377 1.18346 0.86973 0.89565 0.85688 0.93873 1.86507 1.39476 1.96433 1.16751 1.21957 0.99229 0.97488 0.94842 1.21571 0.94669 0.92907 0.99247 1.21652 0.98842 0.98696 0.97848 1.17792 0.92287 0.89213 0.91159 1.47490 1.32829 1.25132 1.06677 1.26888 0.88759 0.89456 0.95740 1.70770 1.24235 1.19719 1.13714 1.27071 0.94992 0.96809 0.89907 1.78127 1.18260 1.10633 1.09417 1.66814 1.14883 1.10387 1.28903 1.22373 0.90820 0.90527 0.98884 0.91767 0.78297 0.82858 0.82503 0.73823 0.72014 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.80 13.53 21.45 0.29 -52.51 15 2 C -0.01 -0.45 5.40 84.65 0.46 0.01 15 3 Si 1.11 47.03 29.90 68.60 2.05 49.08 15 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.28 -10.91 7.11 99.48 0.71 -10.21 15 7 C -0.65 -32.89 8.75 25.60 0.22 -32.67 15 8 H 0.05 2.46 7.74 -2.91 -0.02 2.43 15 9 C 0.25 11.56 2.69 29.10 0.08 11.63 15 10 H 0.04 2.16 7.93 -2.39 -0.02 2.14 15 11 O -0.58 -26.55 11.82 -148.98 -1.76 -28.31 15 12 C -0.13 -5.00 4.95 -19.76 -0.10 -5.10 15 13 C -0.06 -1.94 9.83 22.45 0.22 -1.72 15 14 C -0.15 -4.57 9.72 22.48 0.22 -4.35 15 15 C 0.32 10.23 7.56 132.76 1.00 11.24 15 16 N -0.34 -9.71 3.81 -196.11 -0.75 -10.46 15 17 C 0.29 7.14 12.26 180.25 2.21 9.35 15 18 N -0.56 -13.60 11.19 -203.69 -2.28 -15.88 15 19 C 0.21 4.60 13.03 180.75 2.35 6.95 15 20 N -0.34 -9.13 12.02 -61.21 -0.74 -9.86 15 21 N -0.50 -15.95 9.90 -192.78 -1.91 -17.85 15 22 C 0.13 4.44 10.49 84.66 0.89 5.33 15 23 H 0.27 16.01 6.47 -92.71 -0.60 15.41 15 24 H 0.37 14.24 7.41 -74.06 -0.55 13.69 15 25 H 0.15 4.68 8.06 -2.91 -0.02 4.66 15 26 H 0.16 4.31 7.73 -2.91 -0.02 4.29 15 27 H 0.25 4.70 8.06 -2.91 -0.02 4.67 15 28 H 0.26 2.94 8.06 -2.91 -0.02 2.91 15 29 H 0.18 5.36 6.63 -2.91 -0.02 5.34 15 Total: -1.00 -64.56 266.24 3.29 -61.28 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.82 Total: 23.84 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 7.56 Total: 0.68 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -5.38 Total: -106.57 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -1.76 Total: -28.31 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.05 Total: 49.08 kcal Total: -64.56 3.29 -61.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535775477.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.850 kcal (2) G-P(sol) polarization free energy of solvation -64.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds