Wall clock time and date at job start Mon Mar 30 2020 04:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1 7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.46633 * 111.00074 * 66.04535 * 11 10 9 13 13 C 1.50676 * 110.05230 * 184.73901 * 12 11 10 14 14 O 1.21297 * 120.28493 * 214.97094 * 13 12 11 15 15 N 1.35139 * 119.44159 * 34.95905 * 13 12 11 16 16 C 1.40304 * 118.58091 * 359.18054 * 15 13 12 17 17 C 1.38492 * 120.43104 * 161.89227 * 16 15 13 18 18 C 1.38307 * 119.88282 * 180.14641 * 17 16 15 19 19 C 1.38279 * 120.14341 * 359.97438 * 18 17 16 20 20 C 1.38229 * 120.29690 * 359.93685 * 19 18 17 21 21 C 1.38747 * 119.96328 * 0.04565 * 20 19 18 22 22 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 24 24 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 27 27 H 1.09003 * 109.37703 * 304.92316 * 12 11 10 28 28 H 1.09004 * 109.37753 * 64.68045 * 12 11 10 29 29 H 0.96997 * 120.70782 * 179.16205 * 15 13 12 30 30 H 1.08005 * 120.06103 * 0.16284 * 17 16 15 31 31 H 1.07997 * 119.92588 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.85249 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.01183 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4905 -2.6366 0.0022 12 6 6.0160 -2.0798 1.2528 13 6 7.5180 -1.9824 1.1840 14 8 8.1893 -2.1699 2.1767 15 7 8.1111 -1.6845 0.0068 16 6 7.3016 -1.4920 -1.1229 17 6 7.7964 -0.8339 -2.2365 18 6 6.9876 -0.6477 -3.3428 19 6 5.6870 -1.1174 -3.3391 20 6 5.1869 -1.7767 -2.2319 21 6 5.9911 -1.9685 -1.1177 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 3.6579 -3.1498 0.8925 26 1 3.6585 -3.1510 -0.8874 27 1 5.5960 -1.0864 1.4110 28 1 5.7351 -2.7275 2.0833 29 1 9.0758 -1.6053 -0.0558 30 1 8.8123 -0.4671 -2.2412 31 1 7.3728 -0.1350 -4.2118 32 1 5.0593 -0.9690 -4.2054 33 1 4.1705 -2.1420 -2.2341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020293599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:00 Heat of formation + Delta-G solvation = 3.989358 kcal Electronic energy + Delta-G solvation = -17854.117891 eV Core-core repulsion = 15072.777919 eV Total energy + Delta-G solvation = -2781.339971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19601 -38.69557 -36.88023 -35.11100 -33.01301 -30.44993 -30.19527 -29.35482 -26.94645 -24.37205 -22.89612 -22.15230 -20.71748 -19.11381 -18.26673 -17.38573 -17.06712 -16.04941 -15.44170 -14.90832 -14.50671 -14.42075 -14.26225 -13.74684 -13.46778 -13.16255 -12.90249 -12.62456 -12.34780 -11.87700 -11.64754 -11.11685 -10.96761 -10.74653 -10.62717 -10.21135 -10.11299 -9.89743 -9.44341 -9.39393 -8.67011 -8.24719 -7.32651 -6.17298 -4.17037 1.31687 1.49956 2.53182 3.05591 3.21523 3.30025 3.32016 3.78507 4.07911 4.33359 4.38327 4.80206 5.09752 5.15583 5.25969 5.37416 5.49608 5.53385 5.60730 5.83638 5.94041 6.08606 6.10682 6.33572 6.41154 6.65506 6.70076 6.83200 6.88431 6.98024 7.11880 7.17255 7.44963 7.63883 7.98508 8.36248 8.86009 9.44334 10.95440 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.008495 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.638355 B = 3295.119817 C = 3853.037076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.051 4.051 10 C 0.061 3.939 11 N -0.488 5.488 12 C 0.033 3.967 13 C 0.528 3.472 14 O -0.530 6.530 15 N -0.662 5.662 16 C 0.107 3.893 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.117 4.117 21 C 0.093 3.907 22 H 0.265 0.735 23 H 0.017 0.983 24 H 0.028 0.972 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.409 0.591 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.828 -1.589 -5.287 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.089 4.089 10 C -0.063 4.063 11 N -0.202 5.202 12 C -0.095 4.095 13 C 0.316 3.684 14 O -0.405 6.405 15 N -0.308 5.308 16 C 0.010 3.990 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.007 4.007 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.140 0.860 29 H 0.247 0.753 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.984 -2.141 -4.565 14.865 hybrid contribution 0.510 1.746 -0.037 1.820 sum 14.494 -0.395 -4.602 15.212 Atomic orbital electron populations 1.69896 1.06246 1.27072 1.50306 1.24975 0.94669 0.99028 0.94291 0.86842 0.80232 0.83897 0.78725 1.20008 1.21225 1.19379 1.20898 0.88597 0.94690 1.51776 0.90627 1.20311 0.98503 0.92860 0.97217 1.22444 0.80325 0.99986 1.03589 1.59089 1.11717 1.49517 0.99904 1.22362 0.90027 1.03097 0.94061 1.20892 0.90997 0.74398 0.82094 1.90751 1.66043 1.48928 1.34729 1.43707 1.09853 1.69515 1.07713 1.17508 0.90791 1.01982 0.88695 1.20492 1.00447 1.01332 0.93044 1.20831 0.94170 1.01575 0.97877 1.21032 0.95494 0.98645 0.98235 1.21267 1.00052 1.00064 0.92387 1.18692 0.92405 0.95840 0.93809 0.92539 0.96537 0.95373 0.89819 0.89614 0.89294 0.85967 0.75254 0.85817 0.85904 0.85645 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -13.77 9.66 -34.44 -0.33 -14.10 16 8 H 0.08 2.13 7.99 -52.48 -0.42 1.71 16 9 C -0.05 -1.10 3.15 -27.88 -0.09 -1.19 16 10 C 0.06 1.10 4.76 -3.82 -0.02 1.08 16 11 N -0.49 -8.11 4.87 -172.58 -0.84 -8.95 16 12 C 0.03 0.54 5.46 -5.13 -0.03 0.51 16 13 C 0.53 8.49 7.91 -10.83 -0.09 8.41 16 14 O -0.53 -9.68 17.96 5.54 0.10 -9.58 16 15 N -0.66 -9.16 5.49 -9.65 -0.05 -9.21 16 16 C 0.11 1.56 6.50 -83.43 -0.54 1.01 16 17 C -0.13 -1.62 9.95 -39.46 -0.39 -2.01 16 18 C -0.12 -1.50 10.04 -39.54 -0.40 -1.89 16 19 C -0.11 -1.55 10.03 -39.57 -0.40 -1.95 16 20 C -0.12 -1.84 7.14 -39.40 -0.28 -2.12 16 21 C 0.09 1.52 5.29 -83.64 -0.44 1.07 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.37 5.51 -51.93 -0.29 0.09 16 24 H 0.03 0.62 4.89 -51.93 -0.25 0.36 16 25 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 26 H 0.09 1.50 6.58 -51.93 -0.34 1.16 16 27 H 0.09 1.50 6.25 -51.93 -0.32 1.18 16 28 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.41 4.59 8.90 -40.82 -0.36 4.23 16 30 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.15 2.41 5.50 -52.48 -0.29 2.12 16 LS Contribution 270.23 15.07 4.07 4.07 Total: -1.00 -30.73 270.23 -7.28 -38.01 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.56 Total: 4.30 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.10 Total: -9.26 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.12 Total: -43.91 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.10 Total: -9.58 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.73 -7.28 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020293599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.995 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds