Wall clock time and date at job start Mon Mar 30 2020 04:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1 7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.46633 * 111.00074 * 66.04535 * 11 10 9 13 13 C 1.50676 * 110.05230 * 184.73901 * 12 11 10 14 14 O 1.21297 * 120.28493 * 214.97094 * 13 12 11 15 15 N 1.35139 * 119.44159 * 34.95905 * 13 12 11 16 16 C 1.40304 * 118.58091 * 359.18054 * 15 13 12 17 17 C 1.38492 * 120.43104 * 161.89227 * 16 15 13 18 18 C 1.38307 * 119.88282 * 180.14641 * 17 16 15 19 19 C 1.38279 * 120.14341 * 359.97438 * 18 17 16 20 20 C 1.38229 * 120.29690 * 359.93685 * 19 18 17 21 21 C 1.38747 * 119.96328 * 0.04565 * 20 19 18 22 22 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 24 24 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 27 27 H 1.09003 * 109.37703 * 304.92316 * 12 11 10 28 28 H 1.09004 * 109.37753 * 64.68045 * 12 11 10 29 29 H 0.96997 * 120.70782 * 179.16205 * 15 13 12 30 30 H 1.08005 * 120.06103 * 0.16284 * 17 16 15 31 31 H 1.07997 * 119.92588 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.85249 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.01183 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4905 -2.6366 0.0022 12 6 6.0160 -2.0798 1.2528 13 6 7.5180 -1.9824 1.1840 14 8 8.1893 -2.1699 2.1767 15 7 8.1111 -1.6845 0.0068 16 6 7.3016 -1.4920 -1.1229 17 6 7.7964 -0.8339 -2.2365 18 6 6.9876 -0.6477 -3.3428 19 6 5.6870 -1.1174 -3.3391 20 6 5.1869 -1.7767 -2.2319 21 6 5.9911 -1.9685 -1.1177 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 3.6579 -3.1498 0.8925 26 1 3.6585 -3.1510 -0.8874 27 1 5.5960 -1.0864 1.4110 28 1 5.7351 -2.7275 2.0833 29 1 9.0758 -1.6053 -0.0558 30 1 8.8123 -0.4671 -2.2412 31 1 7.3728 -0.1350 -4.2118 32 1 5.0593 -0.9690 -4.2054 33 1 4.1705 -2.1420 -2.2341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020293599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:59 Heat of formation + Delta-G solvation = -17.590073 kcal Electronic energy + Delta-G solvation = -17855.053645 eV Core-core repulsion = 15072.777919 eV Total energy + Delta-G solvation = -2782.275726 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.39459 -39.93468 -38.12415 -36.29615 -34.99486 -32.19747 -31.29628 -30.46879 -28.43330 -25.88978 -24.09126 -23.47561 -22.26298 -20.27408 -19.44584 -19.04965 -18.57927 -17.35048 -16.70479 -16.38904 -15.97823 -15.73011 -15.53553 -15.04078 -14.86386 -14.53374 -14.37651 -14.18780 -13.64321 -13.47709 -12.89641 -12.77526 -12.42748 -12.09933 -11.96718 -11.82717 -11.65770 -11.45506 -11.28009 -10.84316 -10.71193 -9.36056 -8.53139 -8.30846 -6.34394 0.19497 0.43386 1.31790 1.32717 1.34129 1.43090 1.93776 2.31927 2.58658 2.93035 3.04564 3.19615 3.71053 3.98098 4.11923 4.18591 4.36893 4.44129 4.46174 4.47967 4.61562 4.79869 4.93986 4.97116 5.21451 5.29637 5.38596 5.52299 5.60949 5.66858 5.78165 5.84607 5.90041 6.23560 6.27861 6.73363 6.83970 7.29907 8.84995 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.008495 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.638355 B = 3295.119817 C = 3853.037076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.522 4.522 8 H 0.043 0.957 9 C -0.040 4.040 10 C 0.073 3.927 11 N -0.485 5.485 12 C 0.031 3.969 13 C 0.530 3.470 14 O -0.556 6.556 15 N -0.648 5.648 16 C 0.095 3.905 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.138 4.138 21 C 0.064 3.936 22 H 0.266 0.734 23 H 0.013 0.987 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.423 0.577 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.142 0.858 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.514 -0.326 -6.661 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.560 4.560 8 H 0.061 0.939 9 C -0.078 4.078 10 C -0.052 4.052 11 N -0.200 5.200 12 C -0.098 4.098 13 C 0.318 3.682 14 O -0.433 6.433 15 N -0.295 5.295 16 C -0.002 4.002 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.139 4.139 20 C -0.159 4.159 21 C -0.036 4.036 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.148 0.852 29 H 0.264 0.736 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.160 0.840 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.708 -0.883 -5.977 17.767 hybrid contribution -0.314 1.308 0.282 1.374 sum 16.394 0.425 -5.695 17.360 Atomic orbital electron populations 1.70039 1.08051 1.28044 1.52419 1.25825 0.95385 1.02833 0.94282 0.85835 0.79177 0.79391 0.79334 1.18749 1.21204 1.18188 1.21225 0.91130 0.93372 1.50304 0.93886 1.20167 0.95183 0.95435 0.97063 1.22176 0.81760 0.97569 1.03681 1.59101 1.10217 1.50229 1.00468 1.22385 0.90424 1.02739 0.94245 1.20781 0.90758 0.74249 0.82379 1.90740 1.66407 1.50448 1.35724 1.43551 1.10583 1.68448 1.06891 1.17708 0.90293 1.02617 0.89535 1.20939 1.01987 0.99470 0.91796 1.21277 0.93150 1.00167 0.98807 1.21341 0.96714 0.97848 0.97959 1.21256 0.99624 1.01513 0.93510 1.18891 0.93593 0.97412 0.93687 0.92482 0.96862 0.94841 0.89830 0.89504 0.90243 0.85194 0.73591 0.82297 0.82258 0.83974 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 13.96 21.45 0.30 -56.99 16 2 C 0.01 0.81 5.47 84.65 0.46 1.28 16 3 Si 0.94 43.13 27.47 68.60 1.88 45.02 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.52 -28.19 9.66 25.60 0.25 -27.95 16 8 H 0.04 2.54 7.99 -2.91 -0.02 2.51 16 9 C -0.04 -1.74 3.15 29.85 0.09 -1.65 16 10 C 0.07 2.67 4.76 86.31 0.41 3.08 16 11 N -0.49 -15.87 4.87 -699.92 -3.41 -19.28 16 12 C 0.03 0.97 5.46 85.60 0.47 1.44 16 13 C 0.53 16.34 7.91 87.59 0.69 17.03 16 14 O -0.56 -19.75 17.96 -3.08 -0.06 -19.81 16 15 N -0.65 -16.34 5.49 -302.61 -1.66 -18.00 16 16 C 0.10 2.50 6.50 38.14 0.25 2.75 16 17 C -0.12 -2.42 9.95 22.35 0.22 -2.20 16 18 C -0.11 -2.22 10.04 22.30 0.22 -1.99 16 19 C -0.12 -2.89 10.03 22.28 0.22 -2.66 16 20 C -0.14 -4.19 7.14 22.39 0.16 -4.03 16 21 C 0.06 1.99 5.29 38.30 0.20 2.19 16 22 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 23 H 0.01 0.59 5.51 -2.39 -0.01 0.57 16 24 H 0.03 1.44 4.89 -2.39 -0.01 1.43 16 25 H 0.08 3.00 8.12 -2.39 -0.02 2.98 16 26 H 0.09 3.12 6.58 -2.39 -0.02 3.10 16 27 H 0.08 2.64 6.25 -2.39 -0.01 2.63 16 28 H 0.13 3.79 8.14 -2.38 -0.02 3.77 16 29 H 0.42 8.21 8.90 -92.71 -0.83 7.38 16 30 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.13 4.27 5.50 -2.91 -0.02 4.25 16 Total: -1.00 -66.72 270.23 0.98 -65.74 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.27 Total: 16.02 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.66 Total: -12.70 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -4.77 Total: -94.27 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.06 Total: -19.81 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.02 kcal Total: -66.72 0.98 -65.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020293599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.153 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds