Wall clock time and date at job start Mon Mar 30 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47181 * 340.59254 * 3 2 1 5 5 N 1.46896 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00173 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47411 * 179.97438 * 6 5 4 8 8 C 1.38299 * 119.92643 * 269.72526 * 7 6 5 9 9 C 1.38109 * 120.06519 * 179.72276 * 8 7 6 10 10 C 1.38880 * 119.92869 * 0.56641 * 9 8 7 11 11 O 1.35746 * 120.06809 * 179.68071 * 10 9 8 12 12 C 1.34831 * 116.99929 * 174.49287 * 11 10 9 13 13 H 1.07990 * 120.00367 * 5.05416 * 12 11 10 14 14 C 1.38657 * 119.99564 * 185.05913 * 12 11 10 15 15 N 1.31554 * 120.00347 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99778 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47135 * 59.99814 * 16 14 12 18 18 H 1.48498 * 109.47156 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47102 * 299.99961 * 16 14 12 20 20 C 1.38880 * 119.86229 * 359.71062 * 10 9 8 21 21 C 1.38094 * 119.93221 * 359.97438 * 20 10 9 22 22 H 1.09000 * 109.46783 * 220.58800 * 3 2 1 23 23 H 1.09003 * 109.46865 * 100.58816 * 3 2 1 24 24 H 1.08991 * 109.47502 * 59.99924 * 4 3 2 25 25 H 1.09003 * 109.46864 * 299.99563 * 4 3 2 26 26 H 1.00900 * 111.00166 * 56.03938 * 5 4 3 27 27 H 1.08999 * 109.47001 * 299.99726 * 6 5 4 28 28 H 1.08995 * 109.47623 * 59.99616 * 6 5 4 29 29 H 1.07996 * 119.97034 * 359.97438 * 8 7 6 30 30 H 1.08001 * 120.03309 * 180.27484 * 9 8 7 31 31 H 0.97005 * 119.99919 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.03494 * 179.97438 * 20 10 9 33 33 H 1.08002 * 119.96924 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.3596 0.4793 5 7 4.5877 -1.3587 0.4799 6 6 5.1148 -2.6517 0.9362 7 6 6.6212 -2.6131 0.9228 8 6 7.3113 -2.9996 -0.2117 9 6 8.6917 -2.9600 -0.2291 10 6 9.3871 -2.5425 0.8983 11 8 10.7441 -2.5086 0.8865 12 6 11.3528 -1.9866 1.9705 13 1 10.7679 -1.6946 2.8300 14 6 12.7298 -1.8247 1.9815 15 7 13.4425 -2.1808 0.9346 16 14 13.5731 -1.1008 3.4830 17 1 13.3033 -1.9594 4.6642 18 1 15.0371 -1.0328 3.2438 19 1 13.0491 0.2658 3.7343 20 6 8.6914 -2.1605 2.0379 21 6 7.3109 -2.1962 2.0468 22 1 2.9710 0.7813 0.6686 23 1 2.9713 0.1897 -1.0102 24 1 2.7558 -2.1401 -0.1893 25 1 2.7555 -1.5486 1.4895 26 1 4.9486 -0.6027 1.0422 27 1 4.7650 -2.8495 1.9494 28 1 4.7660 -3.4415 0.2709 29 1 6.7701 -3.3290 -1.0863 30 1 9.2299 -3.2577 -1.1168 31 1 14.4058 -2.0671 0.9422 32 1 9.2293 -1.8358 2.9163 33 1 6.7692 -1.8988 2.9325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034992749.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:12 Heat of formation + Delta-G solvation = 18.836872 kcal Electronic energy + Delta-G solvation = -16106.793866 eV Core-core repulsion = 13326.097731 eV Total energy + Delta-G solvation = -2780.696135 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11698 -37.66612 -36.85041 -35.57299 -32.46459 -31.71531 -30.18208 -28.88975 -25.65459 -24.38149 -22.73802 -21.96012 -20.47293 -18.00994 -17.80248 -17.05516 -16.23481 -15.38717 -14.81133 -14.59991 -14.48619 -14.06301 -13.94517 -13.61779 -13.49926 -12.88621 -12.80259 -12.70003 -12.39770 -12.17793 -11.73938 -11.61317 -11.31335 -11.25077 -10.79697 -10.68598 -10.61053 -10.45139 -9.35901 -8.85939 -8.53300 -8.19038 -7.21222 -6.47010 -4.06057 2.20623 2.23063 2.47120 2.51223 3.11493 3.12372 3.15508 3.58643 3.94824 4.34225 4.64665 4.68486 4.80171 5.08110 5.12269 5.25914 5.29545 5.36388 5.54636 5.58018 5.71196 5.78245 5.87591 6.19715 6.40763 6.68488 6.83642 6.91612 7.02679 7.21796 7.25219 7.30300 7.39380 7.43010 7.81122 7.97784 8.98464 9.68563 10.70852 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045034 B = 0.003487 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.602093 B = 8027.571773 C = 8337.213349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.211 3.789 3 C -0.027 4.027 4 C 0.061 3.939 5 N -0.684 5.684 6 C 0.119 3.881 7 C -0.188 4.188 8 C -0.051 4.051 9 C -0.195 4.195 10 C 0.156 3.844 11 O -0.177 6.177 12 C -0.393 4.393 13 H 0.091 0.909 14 C 0.040 3.960 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.235 4.235 21 C -0.065 4.065 22 H 0.108 0.892 23 H 0.119 0.881 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.345 0.655 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.271 0.729 32 H 0.126 0.874 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 2.208 0.906 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.107 4.107 3 C -0.067 4.067 4 C -0.069 4.069 5 N -0.316 5.316 6 C -0.009 4.009 7 C -0.189 4.189 8 C -0.070 4.070 9 C -0.214 4.214 10 C 0.102 3.898 11 O -0.080 6.080 12 C -0.469 4.469 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.255 4.255 21 C -0.084 4.084 22 H 0.126 0.874 23 H 0.137 0.863 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.164 0.836 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.958 1.966 0.003 15.087 hybrid contribution 0.730 0.471 1.770 1.972 sum -14.228 2.437 1.774 14.544 Atomic orbital electron populations 1.81241 1.13154 1.08478 1.09159 1.29207 0.95297 0.93218 0.92965 1.19276 0.81008 1.00224 1.06216 1.21833 0.89461 0.95630 1.00015 1.60544 1.04901 1.06211 1.59909 1.20613 0.91965 0.90564 0.97725 1.19076 0.93303 1.10977 0.95579 1.20471 0.92754 0.97240 0.96511 1.20237 0.93517 1.09970 0.97696 1.19418 0.84877 0.92439 0.93050 1.83980 1.12957 1.69774 1.41311 1.21275 0.90503 1.41733 0.93392 0.89115 1.25290 0.95443 0.97039 0.98712 1.70027 1.07026 1.43931 1.28705 0.85788 0.78335 0.79417 0.79926 1.19521 1.20272 1.19485 1.21115 0.94158 1.10480 0.99703 1.20587 0.93642 0.97559 0.96576 0.87356 0.86261 0.90216 0.94647 0.83645 0.95188 0.90936 0.86992 0.86558 0.91933 0.85662 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.29 18.54 42.16 0.78 -4.50 16 2 C 0.21 1.82 15.43 -20.76 -0.32 1.50 16 3 C -0.03 -0.15 5.96 -29.52 -0.18 -0.32 16 4 C 0.06 0.44 5.64 -3.83 -0.02 0.42 16 5 N -0.68 -6.55 6.49 -115.07 -0.75 -7.30 16 6 C 0.12 1.37 5.81 -4.98 -0.03 1.34 16 7 C -0.19 -2.90 5.40 -104.57 -0.56 -3.46 16 8 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 9 C -0.19 -3.97 9.99 -39.39 -0.39 -4.36 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 O -0.18 -4.96 9.76 0.06 0.00 -4.96 16 12 C -0.39 -10.75 9.49 30.89 0.29 -10.46 16 13 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 16 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 C -0.24 -4.86 9.17 -39.40 -0.36 -5.22 16 21 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 22 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.35 3.15 8.72 -39.29 -0.34 2.81 16 27 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 33 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -31.34 298.53 -6.27 -37.61 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.85 Total: 2.69 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.70 Total: -18.92 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.79 Total: -35.99 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.34 -6.27 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034992749.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.447 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds