Wall clock time and date at job start Mon Mar 30 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47181 * 340.59254 * 3 2 1 5 5 N 1.46896 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00173 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47411 * 179.97438 * 6 5 4 8 8 C 1.38299 * 119.92643 * 269.72526 * 7 6 5 9 9 C 1.38109 * 120.06519 * 179.72276 * 8 7 6 10 10 C 1.38880 * 119.92869 * 0.56641 * 9 8 7 11 11 O 1.35746 * 120.06809 * 179.68071 * 10 9 8 12 12 C 1.34831 * 116.99929 * 174.49287 * 11 10 9 13 13 H 1.07990 * 120.00367 * 5.05416 * 12 11 10 14 14 C 1.38657 * 119.99564 * 185.05913 * 12 11 10 15 15 N 1.31554 * 120.00347 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99778 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47135 * 59.99814 * 16 14 12 18 18 H 1.48498 * 109.47156 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47102 * 299.99961 * 16 14 12 20 20 C 1.38880 * 119.86229 * 359.71062 * 10 9 8 21 21 C 1.38094 * 119.93221 * 359.97438 * 20 10 9 22 22 H 1.09000 * 109.46783 * 220.58800 * 3 2 1 23 23 H 1.09003 * 109.46865 * 100.58816 * 3 2 1 24 24 H 1.08991 * 109.47502 * 59.99924 * 4 3 2 25 25 H 1.09003 * 109.46864 * 299.99563 * 4 3 2 26 26 H 1.00900 * 111.00166 * 56.03938 * 5 4 3 27 27 H 1.08999 * 109.47001 * 299.99726 * 6 5 4 28 28 H 1.08995 * 109.47623 * 59.99616 * 6 5 4 29 29 H 1.07996 * 119.97034 * 359.97438 * 8 7 6 30 30 H 1.08001 * 120.03309 * 180.27484 * 9 8 7 31 31 H 0.97005 * 119.99919 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.03494 * 179.97438 * 20 10 9 33 33 H 1.08002 * 119.96924 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.3596 0.4793 5 7 4.5877 -1.3587 0.4799 6 6 5.1148 -2.6517 0.9362 7 6 6.6212 -2.6131 0.9228 8 6 7.3113 -2.9996 -0.2117 9 6 8.6917 -2.9600 -0.2291 10 6 9.3871 -2.5425 0.8983 11 8 10.7441 -2.5086 0.8865 12 6 11.3528 -1.9866 1.9705 13 1 10.7679 -1.6946 2.8300 14 6 12.7298 -1.8247 1.9815 15 7 13.4425 -2.1808 0.9346 16 14 13.5731 -1.1008 3.4830 17 1 13.3033 -1.9594 4.6642 18 1 15.0371 -1.0328 3.2438 19 1 13.0491 0.2658 3.7343 20 6 8.6914 -2.1605 2.0379 21 6 7.3109 -2.1962 2.0468 22 1 2.9710 0.7813 0.6686 23 1 2.9713 0.1897 -1.0102 24 1 2.7558 -2.1401 -0.1893 25 1 2.7555 -1.5486 1.4895 26 1 4.9486 -0.6027 1.0422 27 1 4.7650 -2.8495 1.9494 28 1 4.7660 -3.4415 0.2709 29 1 6.7701 -3.3290 -1.0863 30 1 9.2299 -3.2577 -1.1168 31 1 14.4058 -2.0671 0.9422 32 1 9.2293 -1.8358 2.9163 33 1 6.7692 -1.8988 2.9325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034992749.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:12 Heat of formation + Delta-G solvation = -2.622740 kcal Electronic energy + Delta-G solvation = -16107.724425 eV Core-core repulsion = 13326.097731 eV Total energy + Delta-G solvation = -2781.626694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72581 -38.75878 -37.95734 -36.55678 -34.29121 -32.74060 -31.69781 -30.07464 -27.45842 -25.57990 -23.58855 -23.35735 -21.91120 -19.79176 -18.84237 -18.36963 -17.05673 -16.44420 -16.28754 -16.07000 -15.54475 -15.35069 -15.21117 -15.09043 -14.56477 -14.31453 -14.00919 -13.61762 -13.54296 -13.44267 -13.05011 -12.89329 -12.45658 -12.30515 -12.20013 -12.12617 -11.87023 -11.82615 -11.11206 -10.75140 -9.69727 -9.27831 -8.83531 -8.43536 -6.11521 0.68635 0.74911 1.37413 1.48012 1.53601 1.79163 1.86502 2.20800 2.80417 3.00025 3.24659 3.59457 3.81765 4.07915 4.14521 4.22261 4.28066 4.35669 4.58647 4.69325 4.70258 4.85633 4.89266 5.07784 5.12739 5.17410 5.21050 5.39439 5.65383 5.78413 5.89003 6.07573 6.11864 6.32881 6.56500 6.67130 7.01426 7.83998 8.79699 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045034 B = 0.003487 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.602093 B = 8027.571773 C = 8337.213349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.241 3.759 3 C -0.019 4.019 4 C 0.065 3.935 5 N -0.689 5.689 6 C 0.122 3.878 7 C -0.157 4.157 8 C -0.047 4.047 9 C -0.209 4.209 10 C 0.111 3.889 11 O -0.235 6.235 12 C -0.412 4.412 13 H 0.102 0.898 14 C -0.025 4.025 15 N -0.923 5.923 16 Si 1.018 2.982 17 H -0.258 1.258 18 H -0.274 1.274 19 H -0.256 1.256 20 C -0.245 4.245 21 C -0.061 4.061 22 H 0.133 0.867 23 H 0.134 0.866 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.350 0.650 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.108 0.892 31 H 0.272 0.728 32 H 0.116 0.884 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.413 2.880 2.078 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.076 4.076 3 C -0.059 4.059 4 C -0.065 4.065 5 N -0.322 5.322 6 C -0.006 4.006 7 C -0.158 4.158 8 C -0.065 4.065 9 C -0.228 4.228 10 C 0.061 3.939 11 O -0.142 6.142 12 C -0.488 4.488 13 H 0.120 0.880 14 C -0.222 4.222 15 N -0.561 5.561 16 Si 0.837 3.163 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.264 4.264 21 C -0.079 4.079 22 H 0.151 0.849 23 H 0.152 0.848 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.169 0.831 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.163 0.837 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.714 2.637 1.176 17.948 hybrid contribution 1.177 0.210 1.314 1.776 sum -16.538 2.846 2.489 16.964 Atomic orbital electron populations 1.81281 1.15217 1.10588 1.11437 1.29692 0.95644 0.91297 0.90989 1.19404 0.78648 1.00151 1.07655 1.21804 0.87696 0.96436 1.00567 1.60422 1.06457 1.05289 1.59992 1.20602 0.88491 0.92112 0.99419 1.19632 0.95943 1.06295 0.93895 1.20874 0.91163 0.96122 0.98338 1.20485 0.95254 1.10224 0.96831 1.19989 0.83993 0.94658 0.95241 1.83942 1.15329 1.72693 1.42264 1.21779 0.91281 1.41861 0.93921 0.88036 1.26587 0.95916 0.97416 1.02252 1.70183 1.07281 1.47029 1.31616 0.84659 0.76927 0.79020 0.75682 1.18182 1.19837 1.18064 1.21237 0.95997 1.10626 0.98524 1.20976 0.91989 0.96413 0.98518 0.84941 0.84833 0.90187 0.93956 0.83101 0.93418 0.89652 0.83680 0.87356 0.91922 0.86593 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.34 18.54 20.01 0.37 -10.97 16 2 C 0.24 3.47 15.43 89.44 1.38 4.85 16 3 C -0.02 -0.12 5.96 28.79 0.17 0.05 16 4 C 0.07 0.61 5.64 86.30 0.49 1.10 16 5 N -0.69 -9.59 6.49 -517.96 -3.36 -12.95 16 6 C 0.12 2.13 5.81 85.56 0.50 2.63 16 7 C -0.16 -4.20 5.40 -19.83 -0.11 -4.30 16 8 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 9 C -0.21 -8.59 9.99 22.39 0.22 -8.37 16 10 C 0.11 5.40 6.65 22.58 0.15 5.55 16 11 O -0.24 -14.06 9.76 -22.71 -0.22 -14.28 16 12 C -0.41 -23.73 9.49 67.92 0.64 -23.08 16 13 H 0.10 5.31 5.20 -2.92 -0.02 5.29 16 14 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 15 N -0.92 -56.49 13.67 21.61 0.30 -56.19 16 16 Si 1.02 42.23 29.55 68.60 2.03 44.25 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 C -0.24 -10.07 9.17 22.39 0.21 -9.86 16 21 C -0.06 -1.84 9.69 22.25 0.22 -1.62 16 22 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 23 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.35 4.51 8.72 -89.69 -0.78 3.72 16 27 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 28 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 29 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 30 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.27 15.28 8.31 -92.70 -0.77 14.50 16 32 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 33 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -74.40 298.53 4.01 -70.40 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.35 Total: 14.95 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 4.55 Total: -35.20 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.70 Total: -80.12 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.22 Total: -14.28 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -74.40 4.01 -70.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034992749.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.772 kcal (2) G-P(sol) polarization free energy of solvation -74.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds