Wall clock time and date at job start Mon Mar 30 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86804 * 119.99712 * 2 1 4 4 H 1.48500 * 109.46997 * 274.98189 * 3 2 1 5 5 H 1.48496 * 109.47097 * 34.98340 * 3 2 1 6 6 H 1.48503 * 109.46653 * 154.98618 * 3 2 1 7 7 C 1.38859 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00306 * 191.20872 * 7 2 1 9 9 N 1.37107 * 119.99516 * 11.20733 * 7 2 1 10 10 C 1.40122 * 120.63009 * 27.60472 * 9 7 2 11 11 C 1.38864 * 120.36532 * 49.20363 * 10 9 7 12 12 C 1.38035 * 119.82482 * 179.26657 * 11 10 9 13 13 C 1.38992 * 119.98431 * 359.97438 * 12 11 10 14 14 N 1.39725 * 119.95367 * 180.29322 * 13 12 11 15 15 C 1.38974 * 120.09403 * 0.26925 * 13 12 11 16 16 C 1.38007 * 119.90789 * 0.03513 * 15 13 12 17 17 C 1.50510 * 120.25995 * 178.52311 * 16 15 13 18 18 C 1.53071 * 110.25342 * 104.13213 * 17 16 15 19 19 C 1.52875 * 109.51557 * 43.13700 * 18 17 16 20 20 C 1.34567 * 120.62183 * 207.57987 * 9 7 2 21 21 O 1.21291 * 119.91718 * 4.42442 * 20 9 7 22 22 H 0.96999 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.09379 * 359.26425 * 11 10 9 24 24 H 1.08002 * 120.00858 * 179.97438 * 12 11 10 25 25 H 0.96998 * 120.00273 * 179.97438 * 14 13 12 26 26 H 0.97002 * 119.99748 * 359.97438 * 14 13 12 27 27 H 1.08005 * 120.04276 * 180.02562 * 15 13 12 28 28 H 1.08999 * 109.33830 * 224.36770 * 17 16 15 29 29 H 1.08991 * 109.34239 * 343.89445 * 17 16 15 30 30 H 1.09004 * 109.46108 * 163.14647 * 18 17 16 31 31 H 1.08996 * 109.46455 * 283.13226 * 18 17 16 32 32 H 1.08995 * 109.26170 * 283.01776 * 19 18 17 33 33 H 1.08996 * 109.26142 * 163.57310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.3906 2.1073 -1.3948 5 1 1.5025 2.6200 0.8027 6 1 3.5947 1.4121 0.5920 7 6 2.0088 -1.2025 -0.0005 8 1 3.0733 -1.2115 0.1813 9 7 1.3429 -2.3785 -0.2319 10 6 0.1737 -2.3968 -1.0039 11 6 0.1388 -1.7655 -2.2402 12 6 -1.0141 -1.8035 -2.9982 13 6 -2.1359 -2.4729 -2.5234 14 7 -3.3007 -2.5162 -3.2939 15 6 -2.1004 -3.0997 -1.2836 16 6 -0.9495 -3.0562 -0.5232 17 6 -0.9129 -3.7039 0.8349 18 6 -0.1383 -5.0227 0.7724 19 6 1.1240 -4.8341 -0.0691 20 6 1.8001 -3.5369 0.2779 21 8 2.7638 -3.5351 1.0144 22 1 -0.4850 0.8400 0.0004 23 1 1.0115 -1.2461 -2.6078 24 1 -1.0446 -1.3131 -3.9601 25 1 -4.0838 -2.9835 -2.9634 26 1 -3.3261 -2.0789 -4.1594 27 1 -2.9724 -3.6200 -0.9156 28 1 -0.4258 -3.0324 1.5420 29 1 -1.9317 -3.8992 1.1694 30 1 0.1398 -5.3287 1.7809 31 1 -0.7651 -5.7909 0.3196 32 1 0.8546 -4.8281 -1.1252 33 1 1.8099 -5.6595 0.1217 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035323026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:36 Heat of formation + Delta-G solvation = -6.380464 kcal Electronic energy + Delta-G solvation = -18414.113699 eV Core-core repulsion = 15632.324058 eV Total energy + Delta-G solvation = -2781.789641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97289 -37.64623 -35.12279 -34.62514 -32.46536 -31.44626 -30.07175 -27.23019 -26.68784 -24.64414 -22.58507 -21.50003 -19.83464 -18.82352 -17.58097 -16.34281 -16.11026 -15.63328 -14.85512 -14.65020 -14.26937 -13.70555 -13.32171 -12.97490 -12.89075 -12.56096 -12.25070 -12.17047 -11.62398 -11.22544 -11.06686 -10.97549 -10.85342 -10.46638 -10.35814 -10.17031 -9.99803 -9.64603 -9.18824 -8.44408 -7.97290 -7.78274 -6.66325 -5.98617 -3.92241 2.34219 2.53725 3.17763 3.27002 3.32119 3.88773 4.15231 4.44162 4.75744 4.88632 5.23850 5.42578 5.49658 5.56053 5.74690 5.88904 6.02294 6.12734 6.21116 6.32285 6.42112 6.47571 6.58808 6.71733 6.75779 6.98489 7.14408 7.23901 7.54901 7.64739 7.67369 8.13066 8.24784 8.30429 8.55326 9.16176 9.43047 9.95121 10.75880 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.012606 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.235870 B = 2220.686705 C = 3330.748623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.041 3.959 3 Si 0.920 3.080 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.326 4.326 8 H 0.098 0.902 9 N -0.395 5.395 10 C 0.175 3.825 11 C -0.062 4.062 12 C -0.184 4.184 13 C 0.175 3.825 14 N -0.891 5.891 15 C -0.177 4.177 16 C -0.057 4.057 17 C -0.079 4.079 18 C -0.100 4.100 19 C -0.135 4.135 20 C 0.463 3.537 21 O -0.578 6.578 22 H 0.268 0.732 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.388 0.612 26 H 0.389 0.611 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -5.207 -5.495 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.166 4.166 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.453 4.453 8 H 0.115 0.885 9 N -0.108 5.108 10 C 0.079 3.921 11 C -0.083 4.083 12 C -0.207 4.207 13 C 0.074 3.926 14 N -0.433 5.433 15 C -0.200 4.200 16 C -0.060 4.060 17 C -0.116 4.116 18 C -0.138 4.138 19 C -0.175 4.175 20 C 0.253 3.747 21 O -0.461 6.461 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.123 0.877 25 H 0.215 0.785 26 H 0.215 0.785 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.570 -5.029 -5.025 9.681 hybrid contribution -0.172 1.176 -0.258 1.217 sum -6.742 -3.853 -5.283 9.392 Atomic orbital electron populations 1.69927 1.05573 1.27391 1.45770 1.25318 0.95439 0.99565 0.96236 0.86013 0.79722 0.81448 0.78201 1.20377 1.20907 1.19328 1.19524 0.93648 0.82151 1.49949 0.88454 1.41256 1.21477 1.06635 1.41406 1.17156 0.87057 0.97694 0.90163 1.20515 0.97095 0.98041 0.92628 1.20189 0.93182 1.06340 1.00960 1.17499 0.86888 0.96751 0.91455 1.42233 1.13278 1.65236 1.22523 1.19980 0.97950 1.07132 0.94981 1.19142 0.91959 1.00050 0.94806 1.20454 1.00061 0.95956 0.95145 1.21467 0.95051 0.97421 0.99854 1.21573 0.97969 0.96732 1.01259 1.20186 0.86573 0.85470 0.82426 1.90523 1.29852 1.87386 1.38361 0.92129 0.86848 0.87720 0.78492 0.78459 0.87550 0.90439 0.91881 0.91701 0.91681 0.90661 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.88 11.02 55.49 0.61 -22.27 16 2 C 0.04 1.09 4.86 -17.49 -0.08 1.00 16 3 Si 0.92 20.85 29.57 -169.99 -5.03 15.82 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.33 -9.10 8.82 -14.96 -0.13 -9.23 16 8 H 0.10 2.83 7.58 -52.49 -0.40 2.44 16 9 N -0.40 -10.30 2.48 -59.14 -0.15 -10.44 16 10 C 0.17 4.09 2.94 -83.61 -0.25 3.85 16 11 C -0.06 -1.37 8.24 -39.42 -0.32 -1.70 16 12 C -0.18 -3.50 9.89 -39.38 -0.39 -3.89 16 13 C 0.18 3.08 6.76 -83.71 -0.57 2.52 16 14 N -0.89 -11.67 9.09 32.45 0.29 -11.37 16 15 C -0.18 -3.27 9.52 -39.39 -0.37 -3.64 16 16 C -0.06 -1.19 4.67 -104.58 -0.49 -1.68 16 17 C -0.08 -1.53 5.32 -27.94 -0.15 -1.68 16 18 C -0.10 -1.70 6.13 -26.76 -0.16 -1.87 16 19 C -0.13 -2.62 5.39 -28.12 -0.15 -2.78 16 20 C 0.46 11.66 6.19 -11.25 -0.07 11.59 16 21 O -0.58 -16.53 16.92 5.55 0.09 -16.43 16 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.11 2.59 7.94 -52.49 -0.42 2.17 16 24 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.39 4.26 8.84 -40.82 -0.36 3.90 16 26 H 0.39 4.33 8.84 -40.82 -0.36 3.97 16 27 H 0.11 1.68 8.02 -52.48 -0.42 1.26 16 28 H 0.08 1.79 7.57 -51.93 -0.39 1.40 16 29 H 0.06 1.05 7.97 -51.93 -0.41 0.64 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.40 7.22 -51.93 -0.37 1.03 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 273.87 15.07 4.13 4.13 Total: -1.00 -31.53 273.87 -7.15 -38.68 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -3.96 Total: 9.39 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -3.14 Total: -7.50 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.76 Total: -44.08 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.09 Total: -16.43 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.53 -7.15 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035323026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.296 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds