Wall clock time and date at job start Mon Mar 30 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86804 * 119.99712 * 2 1 4 4 H 1.48500 * 109.46997 * 274.98189 * 3 2 1 5 5 H 1.48496 * 109.47097 * 34.98340 * 3 2 1 6 6 H 1.48503 * 109.46653 * 154.98618 * 3 2 1 7 7 C 1.38859 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00306 * 191.20872 * 7 2 1 9 9 N 1.37107 * 119.99516 * 11.20733 * 7 2 1 10 10 C 1.40122 * 120.63009 * 27.60472 * 9 7 2 11 11 C 1.38864 * 120.36532 * 49.20363 * 10 9 7 12 12 C 1.38035 * 119.82482 * 179.26657 * 11 10 9 13 13 C 1.38992 * 119.98431 * 359.97438 * 12 11 10 14 14 N 1.39725 * 119.95367 * 180.29322 * 13 12 11 15 15 C 1.38974 * 120.09403 * 0.26925 * 13 12 11 16 16 C 1.38007 * 119.90789 * 0.03513 * 15 13 12 17 17 C 1.50510 * 120.25995 * 178.52311 * 16 15 13 18 18 C 1.53071 * 110.25342 * 104.13213 * 17 16 15 19 19 C 1.52875 * 109.51557 * 43.13700 * 18 17 16 20 20 C 1.34567 * 120.62183 * 207.57987 * 9 7 2 21 21 O 1.21291 * 119.91718 * 4.42442 * 20 9 7 22 22 H 0.96999 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.09379 * 359.26425 * 11 10 9 24 24 H 1.08002 * 120.00858 * 179.97438 * 12 11 10 25 25 H 0.96998 * 120.00273 * 179.97438 * 14 13 12 26 26 H 0.97002 * 119.99748 * 359.97438 * 14 13 12 27 27 H 1.08005 * 120.04276 * 180.02562 * 15 13 12 28 28 H 1.08999 * 109.33830 * 224.36770 * 17 16 15 29 29 H 1.08991 * 109.34239 * 343.89445 * 17 16 15 30 30 H 1.09004 * 109.46108 * 163.14647 * 18 17 16 31 31 H 1.08996 * 109.46455 * 283.13226 * 18 17 16 32 32 H 1.08995 * 109.26170 * 283.01776 * 19 18 17 33 33 H 1.08996 * 109.26142 * 163.57310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.3906 2.1073 -1.3948 5 1 1.5025 2.6200 0.8027 6 1 3.5947 1.4121 0.5920 7 6 2.0088 -1.2025 -0.0005 8 1 3.0733 -1.2115 0.1813 9 7 1.3429 -2.3785 -0.2319 10 6 0.1737 -2.3968 -1.0039 11 6 0.1388 -1.7655 -2.2402 12 6 -1.0141 -1.8035 -2.9982 13 6 -2.1359 -2.4729 -2.5234 14 7 -3.3007 -2.5162 -3.2939 15 6 -2.1004 -3.0997 -1.2836 16 6 -0.9495 -3.0562 -0.5232 17 6 -0.9129 -3.7039 0.8349 18 6 -0.1383 -5.0227 0.7724 19 6 1.1240 -4.8341 -0.0691 20 6 1.8001 -3.5369 0.2779 21 8 2.7638 -3.5351 1.0144 22 1 -0.4850 0.8400 0.0004 23 1 1.0115 -1.2461 -2.6078 24 1 -1.0446 -1.3131 -3.9601 25 1 -4.0838 -2.9835 -2.9634 26 1 -3.3261 -2.0789 -4.1594 27 1 -2.9724 -3.6200 -0.9156 28 1 -0.4258 -3.0324 1.5420 29 1 -1.9317 -3.8992 1.1694 30 1 0.1398 -5.3287 1.7809 31 1 -0.7651 -5.7909 0.3196 32 1 0.8546 -4.8281 -1.1252 33 1 1.8099 -5.6595 0.1217 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035323026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:36 Heat of formation + Delta-G solvation = -27.547723 kcal Electronic energy + Delta-G solvation = -18415.031580 eV Core-core repulsion = 15632.324058 eV Total energy + Delta-G solvation = -2782.707522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68054 -39.31484 -36.87361 -36.25690 -33.99647 -33.37965 -31.61511 -28.73038 -28.41396 -26.47034 -24.17965 -23.08895 -21.37597 -20.59628 -19.41601 -17.90762 -17.61243 -17.12011 -16.81852 -16.20640 -16.04037 -15.29540 -14.96135 -14.59178 -14.55897 -14.18228 -13.80679 -13.73305 -13.42471 -12.99102 -12.87136 -12.53984 -12.37586 -12.28588 -12.16168 -11.68675 -11.58205 -11.21029 -11.13488 -10.34449 -9.76236 -9.35352 -8.49714 -7.67725 -6.02212 0.79541 0.94943 1.34336 1.37558 1.49424 2.03547 2.26897 3.02553 3.08208 3.28382 3.37957 3.92505 3.97590 4.11462 4.27020 4.39363 4.50740 4.63466 4.78686 4.91218 4.95436 5.01179 5.14820 5.23819 5.24893 5.41601 5.46040 5.63223 5.71744 5.97081 6.13979 6.25210 6.58261 6.89164 7.14125 7.29201 7.50724 8.01626 8.70871 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.012606 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.235870 B = 2220.686705 C = 3330.748623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.013 3.987 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.362 4.362 8 H 0.067 0.933 9 N -0.404 5.404 10 C 0.137 3.863 11 C -0.080 4.080 12 C -0.191 4.191 13 C 0.193 3.807 14 N -0.870 5.870 15 C -0.178 4.178 16 C -0.063 4.063 17 C -0.077 4.077 18 C -0.092 4.092 19 C -0.125 4.125 20 C 0.443 3.557 21 O -0.634 6.634 22 H 0.270 0.730 23 H 0.090 0.910 24 H 0.128 0.872 25 H 0.404 0.596 26 H 0.402 0.598 27 H 0.142 0.858 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 -5.885 -6.795 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.193 4.193 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.489 4.489 8 H 0.085 0.915 9 N -0.116 5.116 10 C 0.043 3.957 11 C -0.101 4.101 12 C -0.214 4.214 13 C 0.089 3.911 14 N -0.412 5.412 15 C -0.201 4.201 16 C -0.065 4.065 17 C -0.114 4.114 18 C -0.129 4.129 19 C -0.165 4.165 20 C 0.235 3.765 21 O -0.521 6.521 22 H 0.080 0.920 23 H 0.108 0.892 24 H 0.146 0.854 25 H 0.234 0.766 26 H 0.231 0.769 27 H 0.160 0.840 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.800 -5.714 -6.385 13.017 hybrid contribution 0.688 1.400 0.063 1.561 sum -9.112 -4.313 -6.322 11.900 Atomic orbital electron populations 1.70037 1.06332 1.28008 1.45201 1.25958 0.96290 1.01804 0.95216 0.85143 0.78116 0.77697 0.78791 1.18940 1.19869 1.20189 1.19446 0.92896 0.84220 1.52337 0.91511 1.41408 1.22196 1.06263 1.41686 1.17405 0.87015 1.00497 0.90796 1.20488 0.97733 0.98609 0.93228 1.20376 0.92649 1.06776 1.01596 1.17569 0.87551 0.94680 0.91337 1.42161 1.12191 1.64418 1.22470 1.20307 0.97970 1.06933 0.94889 1.19372 0.91921 0.99612 0.95596 1.20460 1.01679 0.95953 0.93349 1.21497 0.93954 0.97288 1.00199 1.21559 0.99089 0.93612 1.02242 1.21258 0.86210 0.87238 0.81783 1.90462 1.32280 1.88373 1.41030 0.92014 0.89223 0.85445 0.76629 0.76908 0.84019 0.95420 0.88581 0.91102 0.87148 0.89727 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.99 11.02 21.65 0.24 -46.75 16 2 C 0.01 0.70 4.86 84.90 0.41 1.11 16 3 Si 0.98 43.91 29.57 68.60 2.03 45.93 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.36 -21.48 8.82 84.02 0.74 -20.74 16 8 H 0.07 4.24 7.58 -2.91 -0.02 4.21 16 9 N -0.40 -22.09 2.48 -459.53 -1.14 -23.23 16 10 C 0.14 6.51 2.94 38.11 0.11 6.62 16 11 C -0.08 -3.58 8.24 22.37 0.18 -3.39 16 12 C -0.19 -6.90 9.89 22.40 0.22 -6.68 16 13 C 0.19 6.05 6.76 38.24 0.26 6.31 16 14 N -0.87 -18.40 9.09 -51.25 -0.47 -18.87 16 15 C -0.18 -5.88 9.52 22.39 0.21 -5.66 16 16 C -0.06 -2.52 4.67 -19.84 -0.09 -2.62 16 17 C -0.08 -2.87 5.32 29.81 0.16 -2.72 16 18 C -0.09 -2.91 6.13 30.58 0.19 -2.72 16 19 C -0.12 -4.81 5.39 29.70 0.16 -4.65 16 20 C 0.44 23.38 6.19 87.58 0.54 23.92 16 21 O -0.63 -38.62 16.92 -3.06 -0.05 -38.67 16 22 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 23 H 0.09 4.31 7.94 -2.91 -0.02 4.29 16 24 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 25 H 0.40 6.56 8.84 -92.71 -0.82 5.74 16 26 H 0.40 6.96 8.84 -92.71 -0.82 6.14 16 27 H 0.14 3.65 8.02 -2.91 -0.02 3.63 16 28 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 29 H 0.10 2.88 7.97 -2.39 -0.02 2.86 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.08 3.07 7.22 -2.39 -0.02 3.05 16 33 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -73.27 273.87 3.21 -70.06 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.49 Total: 22.75 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 3.10 Total: -11.22 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -1.37 Total: -88.85 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.05 Total: -38.67 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -73.27 3.21 -70.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035323026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.508 kcal (2) G-P(sol) polarization free energy of solvation -73.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds