Wall clock time and date at job start Mon Mar 30 2020 04:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00079 * 2 1 4 4 H 1.48502 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47229 * 300.00015 * 3 2 1 6 6 H 1.48504 * 109.47272 * 60.00092 * 3 2 1 7 7 C 1.38950 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99844 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00478 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99857 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99940 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.63047 * 320.38362 * 12 10 9 14 14 C 1.52893 * 109.62702 * 80.97133 * 12 10 9 15 15 C 1.50714 * 109.96844 * 170.09023 * 14 12 10 16 16 C 1.38684 * 118.49202 * 163.18613 * 15 14 12 17 17 C 1.38035 * 120.34608 * 179.78235 * 16 15 14 18 18 C 1.38268 * 119.82875 * 359.49595 * 17 16 15 19 19 C 1.38016 * 119.86580 * 0.60913 * 18 17 16 20 20 C 1.37832 * 121.65792 * 342.91739 * 15 14 12 21 21 C 1.50616 * 121.84286 * 0.79334 * 20 15 14 22 22 N 1.46637 * 110.48585 * 342.17777 * 21 20 15 23 23 H 0.96997 * 119.99629 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99507 * 0.02562 * 9 7 2 25 25 H 1.08994 * 109.38876 * 49.93385 * 14 12 10 26 26 H 1.09006 * 109.38347 * 290.24343 * 14 12 10 27 27 H 1.08002 * 119.82446 * 359.49894 * 16 15 14 28 28 H 1.07998 * 120.08386 * 179.73049 * 17 16 15 29 29 H 1.07997 * 120.06533 * 180.33689 * 18 17 16 30 30 H 1.08003 * 119.80967 * 179.71128 * 19 18 17 31 31 H 1.08998 * 109.30190 * 102.49063 * 21 20 15 32 32 H 1.08999 * 109.30352 * 222.07573 * 21 20 15 33 33 H 1.00894 * 111.00010 * 289.19897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2436 -4.8629 -0.0032 13 1 0.3759 -4.7850 0.6518 14 6 0.7906 -5.1937 -1.4255 15 6 0.2532 -6.6007 -1.4804 16 6 -0.5223 -6.9707 -2.5690 17 6 -1.0302 -8.2509 -2.6605 18 6 -0.7560 -9.1723 -1.6667 19 6 0.0138 -8.8044 -0.5818 20 6 0.5190 -7.5160 -0.4847 21 6 1.3459 -7.1591 0.7225 22 7 2.1247 -5.9426 0.4698 23 1 -0.4849 0.8400 -0.0004 24 1 0.3534 -2.3906 -0.0024 25 1 1.6376 -5.1031 -2.1054 26 1 0.0096 -4.4959 -1.7279 27 1 -0.7336 -6.2521 -3.3471 28 1 -1.6372 -8.5333 -3.5080 29 1 -1.1469 -10.1766 -1.7370 30 1 0.2236 -9.5234 0.1963 31 1 0.6867 -6.9944 1.5748 32 1 2.0276 -7.9793 0.9476 33 1 2.8669 -6.1191 -0.1905 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040859999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:37 Heat of formation + Delta-G solvation = -16.105227 kcal Electronic energy + Delta-G solvation = -17212.451647 eV Core-core repulsion = 14430.240309 eV Total energy + Delta-G solvation = -2782.211338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16593 -38.20073 -35.93239 -33.87494 -32.61314 -31.18837 -30.60697 -29.08861 -25.36755 -24.26663 -23.29077 -22.13787 -20.22225 -19.12641 -17.90325 -16.50575 -16.42724 -15.38351 -15.04766 -14.76680 -14.41288 -14.04245 -13.71784 -13.54027 -13.41705 -13.11594 -12.93522 -12.16441 -11.91157 -11.58406 -11.48729 -11.35600 -11.16112 -11.03119 -10.87385 -10.33243 -10.21275 -9.51134 -8.77418 -8.58337 -8.53056 -8.00782 -7.95315 -6.40914 -3.81624 1.33946 1.36707 3.16986 3.27933 3.35288 3.71930 3.85464 4.13574 4.45765 4.74000 4.83819 4.92983 4.96401 5.13905 5.23572 5.34770 5.41222 5.44649 5.64416 5.68523 5.81152 5.92194 6.00863 6.03358 6.23495 6.28206 6.42723 6.48385 6.66975 7.00527 7.18721 7.56446 7.66329 8.07238 8.61929 9.18764 9.55068 10.06474 10.76822 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.041783 B = 0.005076 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.972890 B = 5515.042273 C = 5921.515306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.452 3.548 11 O -0.583 6.583 12 C 0.080 3.920 13 H 0.091 0.909 14 C -0.109 4.109 15 C -0.069 4.069 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.117 4.117 21 C 0.095 3.905 22 N -0.654 5.654 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 -14.930 -3.092 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.237 3.763 11 O -0.467 6.467 12 C -0.034 4.034 13 H 0.109 0.891 14 C -0.148 4.148 15 C -0.069 4.069 16 C -0.136 4.136 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.035 4.035 22 N -0.283 5.283 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.497 -14.523 -2.400 15.130 hybrid contribution -0.637 0.491 -1.030 1.307 sum -4.134 -14.032 -3.430 15.025 Atomic orbital electron populations 1.69623 1.05945 1.28057 1.50638 1.25259 0.95621 0.99707 0.97309 0.85805 0.79741 0.81141 0.77695 1.19194 1.20782 1.20737 1.19766 0.93420 0.82187 1.47443 0.87832 1.41867 1.09180 1.04527 1.64115 1.19559 0.88129 0.84276 0.84323 1.90512 1.13755 1.86997 1.55443 1.21405 0.95775 0.92101 0.94120 0.89061 1.21156 1.01931 0.92861 0.98858 1.19684 0.97444 0.95511 0.94283 1.21142 0.98005 0.96599 0.97825 1.21064 1.00308 0.93701 0.99052 1.21049 0.99389 0.99353 0.94838 1.21064 0.98343 0.95700 0.98267 1.20654 0.99829 0.93770 0.97678 1.21049 0.95409 0.92856 0.94182 1.60602 1.11615 1.04717 1.51346 0.91921 0.77465 0.89810 0.89497 0.86033 0.86287 0.86361 0.86147 0.89621 0.89617 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 10 C 0.45 10.78 7.02 -10.99 -0.08 10.70 16 11 O -0.58 -15.98 16.02 5.55 0.09 -15.90 16 12 C 0.08 1.46 2.85 -68.77 -0.20 1.27 16 13 H 0.09 1.61 8.05 -51.93 -0.42 1.20 16 14 C -0.11 -1.75 5.12 -27.93 -0.14 -1.89 16 15 C -0.07 -0.99 5.77 -104.60 -0.60 -1.59 16 16 C -0.12 -1.51 9.66 -39.49 -0.38 -1.89 16 17 C -0.12 -1.38 10.05 -39.64 -0.40 -1.78 16 18 C -0.13 -1.38 10.05 -39.65 -0.40 -1.77 16 19 C -0.12 -1.31 9.65 -39.48 -0.38 -1.69 16 20 C -0.12 -1.56 5.79 -104.63 -0.61 -2.17 16 21 C 0.10 1.26 6.34 -5.16 -0.03 1.23 16 22 N -0.65 -11.08 6.23 -109.34 -0.68 -11.76 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 25 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 26 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.35 6.01 8.56 -39.29 -0.34 5.68 16 LS Contribution 283.66 15.07 4.27 4.27 Total: -1.00 -31.00 283.66 -8.10 -39.10 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -3.97 Total: 13.94 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.46 Total: -7.57 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.01 Total: -49.90 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.09 Total: -15.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.00 -8.10 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040859999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.998 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds