Wall clock time and date at job start Mon Mar 30 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48496 * 109.47100 * 270.00073 * 3 2 1 5 5 H 1.48496 * 109.46982 * 30.00188 * 3 2 1 6 6 H 1.48502 * 109.47333 * 150.00077 * 3 2 1 7 7 C 1.37880 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99819 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46852 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99931 * 79.71637 * 10 9 7 12 12 O 1.21514 * 120.00320 * 183.58322 * 11 10 9 13 13 C 1.48175 * 119.99881 * 3.57357 * 11 10 9 14 14 C 1.39311 * 119.72111 * 172.20021 * 13 11 10 15 15 C 1.38586 * 119.05405 * 179.97438 * 14 13 11 16 16 C 1.38621 * 118.49375 * 0.02562 * 15 14 13 17 17 C 1.38556 * 119.35051 * 0.27493 * 16 15 14 18 18 N 1.31530 * 120.90216 * 359.42215 * 17 16 15 19 19 C 1.46499 * 120.00573 * 259.70798 * 10 9 7 20 20 C 1.52991 * 117.50474 * 196.72368 * 19 10 9 21 21 C 1.53001 * 117.50001 * 128.05650 * 19 10 9 22 22 H 0.97001 * 119.99966 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47234 * 60.00243 * 9 7 2 24 24 H 1.08995 * 109.47239 * 299.99586 * 9 7 2 25 25 H 1.07997 * 120.46829 * 359.96168 * 14 13 11 26 26 H 1.08005 * 120.75532 * 180.02562 * 15 14 13 27 27 H 1.08005 * 120.32663 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.54955 * 179.69870 * 17 16 15 29 29 H 1.09004 * 115.54703 * 342.39551 * 19 10 9 30 30 H 1.09008 * 117.49968 * 359.97438 * 20 19 10 31 31 H 1.09001 * 117.50426 * 145.01936 * 20 19 10 32 32 H 1.08998 * 117.50209 * 214.98095 * 21 19 10 33 33 H 1.09002 * 117.49657 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.8002 -3.9900 1.1461 12 8 3.6380 -4.8700 1.1344 13 6 2.4353 -3.3314 2.4223 14 6 2.9314 -3.8316 3.6242 15 6 2.5816 -3.2047 4.8096 16 6 1.7471 -2.0993 4.7519 17 6 1.2859 -1.6601 3.5214 18 7 1.6382 -2.2704 2.4108 19 6 2.5059 -4.3162 -1.2505 20 6 3.1800 -5.6855 -1.1445 21 6 3.9788 -4.4744 -1.6330 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.5791 -4.6957 3.6319 26 1 2.9508 -3.5690 5.7569 27 1 1.4561 -1.5878 5.6575 28 1 0.6316 -0.8021 3.4731 29 1 1.7891 -4.1694 -2.0586 30 1 3.3987 -6.0628 -0.1454 31 1 2.9072 -6.4395 -1.8828 32 1 4.2311 -4.4322 -2.6926 33 1 4.7225 -4.0546 -0.9556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:24 Heat of formation + Delta-G solvation = 63.309663 kcal Electronic energy + Delta-G solvation = -18000.026979 eV Core-core repulsion = 15221.259329 eV Total energy + Delta-G solvation = -2778.767650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18020 -38.72159 -35.74016 -34.17473 -32.16374 -31.69861 -30.62718 -26.91698 -24.49155 -23.05134 -22.63936 -21.79884 -21.71210 -19.09799 -16.72390 -16.29272 -16.01283 -15.79055 -15.03679 -14.62410 -14.39702 -14.35611 -13.65505 -13.09624 -12.87210 -12.79604 -12.32614 -12.15465 -11.59826 -11.31496 -11.03359 -10.82857 -10.70303 -10.54400 -10.13417 -9.73351 -9.51323 -9.37383 -8.99914 -8.67372 -8.47513 -8.06458 -7.42619 -5.97592 -3.95069 1.21509 1.75829 3.29890 3.35393 3.37108 3.42944 3.78168 4.41447 4.45900 4.66331 4.83746 5.12797 5.27095 5.38457 5.40236 5.47829 5.53605 5.60771 5.67081 5.90021 6.20136 6.21097 6.24603 6.41603 6.49957 6.57134 6.83677 6.99538 7.06688 7.57740 7.81611 7.94733 8.29680 8.33892 8.52354 8.95106 9.06297 9.63173 11.10740 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.012066 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.115936 B = 2319.965566 C = 3680.105015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.235 3.765 10 N -0.547 5.547 11 C 0.567 3.433 12 O -0.565 6.565 13 C 0.078 3.922 14 C -0.124 4.124 15 C -0.101 4.101 16 C -0.162 4.162 17 C 0.090 3.910 18 N -0.375 5.375 19 C 0.083 3.917 20 C -0.203 4.203 21 C -0.188 4.188 22 H 0.259 0.741 23 H 0.025 0.975 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.156 0.844 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -5.688 5.785 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.116 3.884 10 N -0.273 5.273 11 C 0.355 3.645 12 O -0.447 6.447 13 C -0.061 4.061 14 C -0.145 4.145 15 C -0.127 4.127 16 C -0.183 4.183 17 C -0.068 4.068 18 N -0.086 5.086 19 C -0.023 4.023 20 C -0.241 4.241 21 C -0.226 4.226 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.174 0.826 29 H 0.142 0.858 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.973 -5.683 4.933 7.780 hybrid contribution 0.800 1.042 0.755 1.515 sum 2.774 -4.641 5.688 7.848 Atomic orbital electron populations 1.69922 1.05654 1.26378 1.51313 1.24720 0.94644 0.98266 0.95689 0.86727 0.79921 0.84045 0.78063 1.20863 1.21255 1.20271 1.21193 0.92693 0.90348 1.48493 0.93213 1.20054 0.87475 0.81593 0.99258 1.47732 1.42393 1.32542 1.04599 1.17965 0.81206 0.81982 0.83380 1.90497 1.34562 1.33077 1.86609 1.21290 0.96954 0.94272 0.93538 1.22009 0.99550 1.00753 0.92217 1.21397 0.97534 0.95693 0.98049 1.22349 0.98689 0.97515 0.99725 1.23092 0.97568 0.98842 0.87331 1.68847 1.07290 1.03818 1.28600 1.21637 0.95403 0.96290 0.88954 1.23860 1.03973 0.91110 1.05109 1.23123 0.95732 1.03120 1.00649 0.93105 0.95689 0.90400 0.84473 0.85174 0.85315 0.82637 0.85755 0.84628 0.90110 0.89351 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.49 -13.04 7.60 -34.44 -0.26 -13.30 16 8 H 0.05 1.40 7.81 -52.48 -0.41 0.99 16 9 C 0.23 5.82 4.84 -5.19 -0.03 5.79 16 10 N -0.55 -12.24 2.86 -168.46 -0.48 -12.72 16 11 C 0.57 12.53 7.34 -12.18 -0.09 12.44 16 12 O -0.57 -12.49 12.10 5.35 0.06 -12.42 16 13 C 0.08 1.61 6.59 -83.01 -0.55 1.07 16 14 C -0.12 -2.12 9.63 -39.05 -0.38 -2.49 16 15 C -0.10 -1.42 10.17 -39.31 -0.40 -1.82 16 16 C -0.16 -2.34 10.11 -39.32 -0.40 -2.73 16 17 C 0.09 1.63 11.18 -17.56 -0.20 1.44 16 18 N -0.38 -8.08 4.84 -9.80 -0.05 -8.12 16 19 C 0.08 1.61 6.61 -67.94 -0.45 1.16 16 20 C -0.20 -3.56 9.63 -26.70 -0.26 -3.81 16 21 C -0.19 -3.41 9.88 -26.69 -0.26 -3.67 16 22 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 23 H 0.03 0.65 7.90 -51.93 -0.41 0.24 16 24 H 0.08 2.01 5.51 -51.93 -0.29 1.72 16 25 H 0.14 2.17 7.66 -52.49 -0.40 1.77 16 26 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 27 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.16 2.69 8.06 -52.48 -0.42 2.27 16 29 H 0.12 2.24 8.01 -51.93 -0.42 1.82 16 30 H 0.14 2.65 5.15 -52.36 -0.27 2.38 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.09 1.88 7.64 -51.93 -0.40 1.48 16 LS Contribution 281.46 15.07 4.24 4.24 Total: -1.00 -29.45 281.46 -7.71 -37.16 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.84 Total: 3.79 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -3.36 Total: -4.20 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.21 Total: -44.67 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.06 Total: -12.42 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.45 -7.71 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.469 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds