Wall clock time and date at job start Mon Mar 30 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48496 * 109.47100 * 270.00073 * 3 2 1 5 5 H 1.48496 * 109.46982 * 30.00188 * 3 2 1 6 6 H 1.48502 * 109.47333 * 150.00077 * 3 2 1 7 7 C 1.37880 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99819 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46852 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99931 * 79.71637 * 10 9 7 12 12 O 1.21514 * 120.00320 * 183.58322 * 11 10 9 13 13 C 1.48175 * 119.99881 * 3.57357 * 11 10 9 14 14 C 1.39311 * 119.72111 * 172.20021 * 13 11 10 15 15 C 1.38586 * 119.05405 * 179.97438 * 14 13 11 16 16 C 1.38621 * 118.49375 * 0.02562 * 15 14 13 17 17 C 1.38556 * 119.35051 * 0.27493 * 16 15 14 18 18 N 1.31530 * 120.90216 * 359.42215 * 17 16 15 19 19 C 1.46499 * 120.00573 * 259.70798 * 10 9 7 20 20 C 1.52991 * 117.50474 * 196.72368 * 19 10 9 21 21 C 1.53001 * 117.50001 * 128.05650 * 19 10 9 22 22 H 0.97001 * 119.99966 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47234 * 60.00243 * 9 7 2 24 24 H 1.08995 * 109.47239 * 299.99586 * 9 7 2 25 25 H 1.07997 * 120.46829 * 359.96168 * 14 13 11 26 26 H 1.08005 * 120.75532 * 180.02562 * 15 14 13 27 27 H 1.08005 * 120.32663 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.54955 * 179.69870 * 17 16 15 29 29 H 1.09004 * 115.54703 * 342.39551 * 19 10 9 30 30 H 1.09008 * 117.49968 * 359.97438 * 20 19 10 31 31 H 1.09001 * 117.50426 * 145.01936 * 20 19 10 32 32 H 1.08998 * 117.50209 * 214.98095 * 21 19 10 33 33 H 1.09002 * 117.49657 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.8002 -3.9900 1.1461 12 8 3.6380 -4.8700 1.1344 13 6 2.4353 -3.3314 2.4223 14 6 2.9314 -3.8316 3.6242 15 6 2.5816 -3.2047 4.8096 16 6 1.7471 -2.0993 4.7519 17 6 1.2859 -1.6601 3.5214 18 7 1.6382 -2.2704 2.4108 19 6 2.5059 -4.3162 -1.2505 20 6 3.1800 -5.6855 -1.1445 21 6 3.9788 -4.4744 -1.6330 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.5791 -4.6957 3.6319 26 1 2.9508 -3.5690 5.7569 27 1 1.4561 -1.5878 5.6575 28 1 0.6316 -0.8021 3.4731 29 1 1.7891 -4.1694 -2.0586 30 1 3.3987 -6.0628 -0.1454 31 1 2.9072 -6.4395 -1.8828 32 1 4.2311 -4.4322 -2.6926 33 1 4.7225 -4.0546 -0.9556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:24 Heat of formation + Delta-G solvation = 46.664206 kcal Electronic energy + Delta-G solvation = -18000.748780 eV Core-core repulsion = 15221.259329 eV Total energy + Delta-G solvation = -2779.489451 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.69566 -40.18652 -37.34406 -35.90149 -34.04863 -33.10885 -32.00369 -28.88617 -25.99811 -24.60985 -24.34091 -23.24383 -23.18022 -20.61532 -18.62413 -17.98127 -17.57180 -17.17765 -16.40509 -16.31900 -16.14680 -15.98698 -15.06450 -14.60739 -14.40747 -14.24884 -14.04791 -13.91595 -13.16530 -12.96830 -12.73655 -12.59021 -12.35371 -12.13731 -12.09538 -11.38630 -11.22175 -10.77433 -10.61977 -10.43106 -10.04175 -9.63303 -9.13302 -8.02834 -6.06989 -0.15506 0.49789 1.38678 1.41236 1.49276 1.81365 2.20151 2.48761 2.98868 3.16440 3.30914 3.36572 3.82049 4.00848 4.08904 4.16849 4.22142 4.23517 4.25795 4.60213 4.74578 4.83171 4.91724 5.01023 5.15342 5.20009 5.26224 5.41303 5.54481 5.76196 5.94269 6.03798 6.29940 6.53000 6.93110 7.09825 7.37461 7.54969 9.04553 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.012066 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.115936 B = 2319.965566 C = 3680.105015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.034 3.966 3 Si 0.937 3.063 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.285 1.285 7 C -0.490 4.490 8 H 0.026 0.974 9 C 0.253 3.747 10 N -0.558 5.558 11 C 0.557 3.443 12 O -0.574 6.574 13 C 0.039 3.961 14 C -0.123 4.123 15 C -0.085 4.085 16 C -0.137 4.137 17 C 0.066 3.934 18 N -0.419 5.419 19 C 0.052 3.948 20 C -0.181 4.181 21 C -0.183 4.183 22 H 0.262 0.738 23 H 0.005 0.995 24 H 0.069 0.931 25 H 0.146 0.854 26 H 0.180 0.820 27 H 0.175 0.825 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -5.787 7.391 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.529 4.529 8 H 0.045 0.955 9 C 0.133 3.867 10 N -0.283 5.283 11 C 0.346 3.654 12 O -0.457 6.457 13 C -0.098 4.098 14 C -0.144 4.144 15 C -0.111 4.111 16 C -0.157 4.157 17 C -0.093 4.093 18 N -0.130 5.130 19 C -0.053 4.053 20 C -0.219 4.219 21 C -0.222 4.222 22 H 0.071 0.929 23 H 0.023 0.977 24 H 0.086 0.914 25 H 0.164 0.836 26 H 0.197 0.803 27 H 0.192 0.808 28 H 0.171 0.829 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.521 -5.795 6.528 9.086 hybrid contribution 0.649 1.030 0.371 1.273 sum 3.171 -4.765 6.899 8.964 Atomic orbital electron populations 1.69999 1.06549 1.27080 1.51992 1.25235 0.95288 1.00612 0.95402 0.85899 0.78545 0.81122 0.77981 1.20597 1.20132 1.21017 1.21137 0.91445 0.91613 1.48720 0.95524 1.19649 0.87481 0.81875 0.97697 1.47701 1.42322 1.32399 1.05919 1.18389 0.81001 0.82006 0.84031 1.90477 1.34814 1.33457 1.86997 1.21261 0.99131 0.95401 0.94031 1.22228 0.99094 1.00971 0.92140 1.21937 0.95927 0.94492 0.98716 1.22745 0.96503 0.96780 0.99657 1.23276 0.98503 0.99223 0.88327 1.68555 1.08536 1.04893 1.31027 1.21975 0.96651 0.98021 0.88613 1.23805 1.02225 0.90833 1.05000 1.23132 0.94055 1.03227 1.01746 0.92906 0.97683 0.91359 0.83612 0.80262 0.80753 0.82882 0.84696 0.86575 0.86587 0.86393 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.13 13.29 21.45 0.28 -50.85 16 2 C 0.03 1.83 5.46 84.66 0.46 2.29 16 3 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.49 -27.03 7.60 25.60 0.19 -26.84 16 8 H 0.03 1.56 7.81 -2.91 -0.02 1.54 16 9 C 0.25 13.07 4.84 85.63 0.41 13.49 16 10 N -0.56 -25.90 2.86 -805.17 -2.30 -28.21 16 11 C 0.56 25.40 7.34 86.88 0.64 26.04 16 12 O -0.57 -25.95 12.10 -3.76 -0.05 -25.99 16 13 C 0.04 1.65 6.59 41.91 0.28 1.93 16 14 C -0.12 -4.02 9.63 22.61 0.22 -3.80 16 15 C -0.09 -2.07 10.17 22.44 0.23 -1.84 16 16 C -0.14 -3.46 10.11 22.44 0.23 -3.24 16 17 C 0.07 2.34 11.18 84.81 0.95 3.29 16 18 N -0.42 -18.42 4.84 -184.91 -0.89 -19.32 16 19 C 0.05 2.05 6.61 44.99 0.30 2.35 16 20 C -0.18 -6.21 9.63 30.62 0.29 -5.92 16 21 C -0.18 -6.61 9.88 30.62 0.30 -6.30 16 22 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 23 H 0.01 0.28 7.90 -2.39 -0.02 0.26 16 24 H 0.07 3.70 5.51 -2.39 -0.01 3.69 16 25 H 0.15 4.40 7.66 -2.91 -0.02 4.38 16 26 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 27 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.15 5.31 8.06 -2.91 -0.02 5.28 16 29 H 0.14 4.91 8.01 -2.38 -0.02 4.89 16 30 H 0.12 4.53 5.15 -9.30 -0.05 4.48 16 31 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.07 2.75 7.64 -2.39 -0.02 2.73 16 Total: -1.00 -66.02 281.46 4.65 -61.37 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.08 Total: 15.76 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 4.50 Total: 1.44 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -2.91 Total: -98.37 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.02 4.65 -61.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.034 kcal (2) G-P(sol) polarization free energy of solvation -66.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds