Wall clock time and date at job start Mon Mar 30 2020 04:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 120.00214 * 2 1 4 4 H 1.48495 * 109.47428 * 269.99888 * 3 2 1 5 5 H 1.48498 * 109.46959 * 30.00022 * 3 2 1 6 6 H 1.48499 * 109.47119 * 149.99592 * 3 2 1 7 7 C 1.38952 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00350 * 0.02562 * 7 2 1 9 9 N 1.37104 * 119.99971 * 180.02562 * 7 2 1 10 10 C 1.34770 * 119.99803 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00360 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99754 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.27167 * 40.48867 * 12 10 9 14 14 N 1.46636 * 109.27020 * 159.99911 * 12 10 9 15 15 C 1.47164 * 110.25783 * 172.78578 * 14 12 10 16 16 C 1.52882 * 108.51251 * 288.75581 * 15 14 12 17 17 C 1.50724 * 109.95757 * 50.40054 * 16 15 14 18 18 C 1.38681 * 118.48237 * 163.32898 * 17 16 15 19 19 C 1.38036 * 120.34349 * 179.55811 * 18 17 16 20 20 C 1.38254 * 119.82814 * 0.02562 * 19 18 17 21 21 C 1.38014 * 119.87218 * 0.07230 * 20 19 18 22 22 C 1.37827 * 121.66063 * 343.03079 * 17 16 15 23 23 H 0.97001 * 119.99977 * 0.02562 * 1 2 3 24 24 H 0.96995 * 119.99839 * 359.97438 * 9 7 2 25 25 H 1.00903 * 110.99760 * 296.20537 * 14 12 10 26 26 H 1.09001 * 109.62787 * 48.44806 * 15 14 12 27 27 H 1.08997 * 109.62896 * 169.03995 * 15 14 12 28 28 H 1.08995 * 109.39423 * 290.24651 * 16 15 14 29 29 H 1.09003 * 109.30319 * 170.49131 * 16 15 14 30 30 H 1.07998 * 119.82582 * 359.54189 * 18 17 16 31 31 H 1.08003 * 120.08193 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.06574 * 180.09757 * 20 19 18 33 33 H 1.07999 * 119.81363 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 1 5.9199 -1.5884 0.6709 14 7 6.0442 -3.6715 0.4755 15 6 7.5055 -3.7580 0.3236 16 6 7.8326 -3.8745 -1.1653 17 6 7.1187 -2.7931 -1.9351 18 6 7.5466 -2.5052 -3.2224 19 6 6.9145 -1.5285 -3.9653 20 6 5.8497 -0.8332 -3.4230 21 6 5.4244 -1.1176 -2.1412 22 6 6.0588 -2.0986 -1.3929 23 1 -0.4850 0.8401 -0.0004 24 1 3.8648 -0.3634 0.0007 25 1 5.7701 -3.8326 1.4331 26 1 7.9697 -2.8600 0.7311 27 1 7.8769 -4.6371 0.8501 28 1 7.5129 -4.8503 -1.5309 29 1 8.9083 -3.7696 -1.3071 30 1 8.3788 -3.0479 -3.6458 31 1 7.2510 -1.3080 -4.9676 32 1 5.3513 -0.0694 -4.0014 33 1 4.5927 -0.5736 -1.7183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043595807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:56 Heat of formation + Delta-G solvation = 1.411625 kcal Electronic energy + Delta-G solvation = -17776.940544 eV Core-core repulsion = 14995.488793 eV Total energy + Delta-G solvation = -2781.451750 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18801 -38.02914 -36.18665 -33.97757 -32.61639 -31.59209 -30.70529 -29.05154 -25.86330 -23.96457 -23.11062 -22.03643 -19.84473 -19.21491 -18.31136 -16.73421 -16.04720 -15.82479 -15.32736 -14.92877 -14.45236 -14.24715 -13.64721 -13.31705 -13.23570 -12.98955 -12.68798 -12.29910 -12.24026 -11.92296 -11.84938 -11.44631 -11.24093 -10.79627 -10.58356 -10.44994 -9.98892 -9.57944 -8.83549 -8.61184 -8.39419 -8.19079 -7.99968 -6.32738 -3.84277 1.52598 1.57834 3.00043 3.03897 3.12886 3.66425 3.89712 4.07590 4.18579 4.65654 4.79917 4.94213 5.08005 5.22212 5.24188 5.29086 5.38222 5.50993 5.56754 5.60458 5.72627 5.84772 5.95416 6.04731 6.18133 6.27753 6.62776 6.71318 6.77912 7.06491 7.17725 7.52570 7.57322 8.11611 8.57537 8.92891 9.39046 9.79350 10.80347 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.008120 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.339773 B = 3447.398572 C = 4128.285523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.044 3.956 3 Si 0.871 3.129 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.121 0.879 9 N -0.591 5.591 10 C 0.461 3.539 11 O -0.548 6.548 12 C 0.115 3.885 13 H 0.058 0.942 14 N -0.657 5.657 15 C 0.055 3.945 16 C -0.076 4.076 17 C -0.066 4.066 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.063 4.063 23 H 0.274 0.726 24 H 0.369 0.631 25 H 0.352 0.648 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.499 -0.370 -3.008 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.159 4.159 3 Si 0.697 3.303 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.139 0.861 9 N -0.231 5.231 10 C 0.246 3.754 11 O -0.428 6.428 12 C 0.001 3.999 13 H 0.075 0.925 14 N -0.289 5.289 15 C -0.074 4.074 16 C -0.113 4.113 17 C -0.067 4.067 18 C -0.144 4.144 19 C -0.140 4.140 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.064 4.064 23 H 0.084 0.916 24 H 0.203 0.797 25 H 0.171 0.829 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.715 -1.310 -3.576 17.143 hybrid contribution 0.744 2.075 0.642 2.296 sum 17.459 0.766 -2.934 17.720 Atomic orbital electron populations 1.69612 1.05569 1.27475 1.49253 1.25001 0.95455 0.97775 0.97673 0.86802 0.79928 0.84401 0.79150 1.19337 1.19959 1.19488 1.19444 0.79062 0.96707 1.48132 0.86133 1.42385 1.07595 1.05908 1.67250 1.19386 0.87227 0.84673 0.84142 1.90575 1.68767 1.30839 1.52655 1.20206 0.95009 0.91217 0.93467 0.92474 1.60168 1.10466 1.30409 1.27869 1.21996 0.88392 1.00626 0.96412 1.20548 0.98641 0.97813 0.94296 1.19497 0.95803 0.96725 0.94647 1.20999 1.00684 0.98746 0.94018 1.21041 0.96586 0.96793 0.99548 1.21049 0.97195 1.00324 0.95403 1.21425 0.99319 0.97510 0.94859 1.19282 0.95548 0.96427 0.95171 0.91569 0.79705 0.82926 0.94869 0.90081 0.89781 0.90752 0.86309 0.86281 0.85987 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.87 19.28 27.74 -169.99 -4.71 14.57 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.47 6.52 56.52 0.37 -5.11 16 7 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 9 N -0.59 -14.26 3.92 -10.96 -0.04 -14.30 16 10 C 0.46 10.89 6.42 -10.99 -0.07 10.82 16 11 O -0.55 -15.30 16.12 5.55 0.09 -15.21 16 12 C 0.11 2.12 2.87 -70.20 -0.20 1.92 16 13 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 14 N -0.66 -10.87 6.04 -109.29 -0.66 -11.53 16 15 C 0.06 0.68 6.58 -3.74 -0.02 0.66 16 16 C -0.08 -0.93 5.94 -27.93 -0.17 -1.10 16 17 C -0.07 -1.01 5.77 -104.60 -0.60 -1.61 16 18 C -0.13 -1.69 9.66 -39.49 -0.38 -2.07 16 19 C -0.12 -1.62 10.05 -39.65 -0.40 -2.02 16 20 C -0.12 -1.86 10.05 -39.66 -0.40 -2.25 16 21 C -0.11 -2.01 9.08 -39.48 -0.36 -2.37 16 22 C -0.06 -1.12 5.47 -104.63 -0.57 -1.69 16 23 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.37 7.95 4.62 -40.82 -0.19 7.76 16 25 H 0.35 5.45 8.88 -39.29 -0.35 5.10 16 26 H 0.03 0.38 8.05 -51.93 -0.42 -0.03 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.13 2.45 5.27 -52.49 -0.28 2.17 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -32.93 275.30 -7.58 -40.51 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -3.75 Total: 14.07 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.42 Total: -7.40 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.07 Total: -50.68 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.93 -7.58 -40.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043595807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.917 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds