Wall clock time and date at job start Mon Mar 30 2020 04:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00445 * 2 1 4 4 H 1.48498 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47052 * 300.00360 * 3 2 1 6 6 H 1.48503 * 109.46906 * 60.00291 * 3 2 1 7 7 C 1.38949 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.34785 * 120.00063 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99639 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00097 * 180.02562 * 10 9 7 13 13 H 1.09001 * 109.26604 * 319.50729 * 12 10 9 14 14 N 1.46626 * 109.26804 * 199.99607 * 12 10 9 15 15 C 1.47166 * 110.25727 * 187.30880 * 14 12 10 16 16 C 1.52904 * 108.49205 * 71.28820 * 15 14 12 17 17 C 1.50721 * 109.94078 * 309.56656 * 16 15 14 18 18 C 1.38679 * 118.48096 * 196.79382 * 17 16 15 19 19 C 1.38037 * 120.34932 * 180.25061 * 18 17 16 20 20 C 1.38259 * 119.82369 * 359.97438 * 19 18 17 21 21 C 1.38011 * 119.87121 * 359.92190 * 20 19 18 22 22 C 1.37830 * 121.66599 * 16.88669 * 17 16 15 23 23 H 0.97008 * 119.99576 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00589 * 359.97438 * 9 7 2 25 25 H 1.00895 * 111.00160 * 310.73826 * 14 12 10 26 26 H 1.09005 * 109.63501 * 190.98746 * 15 14 12 27 27 H 1.08995 * 109.63593 * 311.58798 * 15 14 12 28 28 H 1.08997 * 109.39368 * 69.72184 * 16 15 14 29 29 H 1.09004 * 109.39171 * 189.43138 * 16 15 14 30 30 H 1.08002 * 119.82335 * 0.22880 * 18 17 16 31 31 H 1.07989 * 120.08524 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.06492 * 179.97438 * 20 19 18 33 33 H 1.08005 * 119.81298 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8896 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 1 0.3858 -4.7833 0.6667 14 7 2.1278 -5.9325 0.4723 15 6 1.4731 -7.2413 0.3166 16 6 1.4152 -7.5805 -1.1732 17 6 0.8367 -6.4205 -1.9423 18 6 0.3751 -6.6457 -3.2305 19 6 -0.1574 -5.6099 -3.9716 20 6 -0.2312 -4.3415 -3.4265 21 6 0.2260 -4.1169 -2.1438 22 6 0.7608 -5.1568 -1.3974 23 1 -0.4850 0.8401 0.0004 24 1 0.3532 -2.3907 0.0002 25 1 3.0127 -5.9110 -0.0119 26 1 2.0475 -8.0032 0.8437 27 1 0.4621 -7.1955 0.7213 28 1 2.4214 -7.7898 -1.5361 29 1 0.7887 -8.4604 -1.3199 30 1 0.4327 -7.6366 -3.6563 31 1 -0.5152 -5.7899 -4.9744 32 1 -0.6467 -3.5282 -4.0029 33 1 0.1674 -3.1257 -1.7187 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043595808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:59 Heat of formation + Delta-G solvation = -11.043651 kcal Electronic energy + Delta-G solvation = -17720.970673 eV Core-core repulsion = 14938.978822 eV Total energy + Delta-G solvation = -2781.991852 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21217 -37.89527 -36.15126 -33.96506 -32.49631 -31.18960 -30.37290 -28.91693 -25.71310 -23.94318 -23.06698 -22.02790 -20.01399 -19.28922 -17.94422 -16.60236 -16.12847 -15.45426 -15.07096 -14.65189 -14.41313 -13.99650 -13.85378 -13.38555 -13.27988 -12.95472 -12.54626 -12.09122 -12.01597 -11.56099 -11.50782 -11.35026 -11.12172 -10.96789 -10.55859 -10.33915 -10.24580 -9.54441 -8.79235 -8.47368 -8.29888 -8.02339 -8.00038 -6.44889 -3.85940 1.56207 1.63723 3.14889 3.26251 3.33490 3.79315 3.95637 4.15202 4.50731 4.81743 4.93622 5.04504 5.06712 5.27045 5.30696 5.37451 5.39874 5.59711 5.67263 5.82761 5.86669 5.99848 6.04295 6.16602 6.29182 6.34665 6.66866 6.81340 6.83713 7.22018 7.26715 7.53175 7.70007 8.01648 8.54791 9.13520 9.47336 9.97787 10.72533 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.007098 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.191266 B = 3943.604778 C = 4623.310346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.105 0.895 9 N -0.558 5.558 10 C 0.455 3.545 11 O -0.582 6.582 12 C 0.114 3.886 13 H 0.101 0.899 14 N -0.658 5.658 15 C 0.055 3.945 16 C -0.118 4.118 17 C -0.081 4.081 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.101 4.101 23 H 0.272 0.728 24 H 0.393 0.607 25 H 0.355 0.645 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -11.893 -4.547 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.195 5.195 10 C 0.240 3.760 11 O -0.466 6.466 12 C 0.000 4.000 13 H 0.118 0.882 14 N -0.289 5.289 15 C -0.075 4.075 16 C -0.157 4.157 17 C -0.081 4.081 18 C -0.145 4.145 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.103 4.103 23 H 0.082 0.918 24 H 0.227 0.773 25 H 0.176 0.824 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.559 -11.636 -3.840 12.518 hybrid contribution -0.295 0.776 -1.154 1.422 sum -2.854 -10.860 -4.994 12.290 Atomic orbital electron populations 1.69615 1.05912 1.28186 1.50371 1.25258 0.95641 0.99713 0.97164 0.85798 0.79751 0.81074 0.77730 1.19195 1.20747 1.20684 1.19775 0.93474 0.82080 1.47649 0.87761 1.41994 1.09105 1.04521 1.63912 1.19475 0.88075 0.84281 0.84186 1.90507 1.13692 1.86746 1.55688 1.20359 0.96076 0.92474 0.91090 0.88177 1.60782 1.06281 1.01282 1.60519 1.22122 1.00322 0.91657 0.93358 1.21225 1.01135 0.96145 0.97156 1.19498 0.99738 0.94019 0.94829 1.20962 1.00537 0.98912 0.94063 1.21045 1.00327 0.93267 0.99523 1.21114 1.00186 0.96881 0.95703 1.21636 0.96396 0.99843 0.94515 1.20240 0.99585 0.93234 0.97247 0.91815 0.77267 0.82441 0.89999 0.90758 0.90639 0.90526 0.86559 0.86444 0.86056 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.09 4.11 -10.96 -0.05 -14.13 16 10 C 0.45 10.98 6.43 -10.98 -0.07 10.90 16 11 O -0.58 -16.02 15.55 5.55 0.09 -15.94 16 12 C 0.11 2.19 2.92 -70.20 -0.20 1.99 16 13 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 14 N -0.66 -11.46 6.51 -109.27 -0.71 -12.17 16 15 C 0.06 0.72 6.62 -3.73 -0.02 0.70 16 16 C -0.12 -1.46 5.82 -27.92 -0.16 -1.62 16 17 C -0.08 -1.24 5.77 -104.60 -0.60 -1.84 16 18 C -0.13 -1.75 9.66 -39.49 -0.38 -2.14 16 19 C -0.12 -1.73 10.05 -39.65 -0.40 -2.12 16 20 C -0.12 -1.93 10.05 -39.66 -0.40 -2.33 16 21 C -0.11 -1.95 9.08 -39.48 -0.36 -2.31 16 22 C -0.10 -1.81 5.46 -104.62 -0.57 -2.38 16 23 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 24 H 0.39 9.50 6.76 -40.82 -0.28 9.22 16 25 H 0.36 6.57 7.85 -39.29 -0.31 6.27 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.14 2.87 5.28 -52.48 -0.28 2.59 16 LS Contribution 277.27 15.07 4.18 4.18 Total: -1.00 -30.36 277.27 -7.96 -38.31 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -3.75 Total: 16.26 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.42 Total: -9.06 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.03 Total: -49.65 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.36 -7.96 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043595808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.270 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds