Wall clock time and date at job start Mon Mar 30 2020 04:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00445 * 2 1 4 4 H 1.48498 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47052 * 300.00360 * 3 2 1 6 6 H 1.48503 * 109.46906 * 60.00291 * 3 2 1 7 7 C 1.38949 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.34785 * 120.00063 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99639 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00097 * 180.02562 * 10 9 7 13 13 H 1.09001 * 109.26604 * 319.50729 * 12 10 9 14 14 N 1.46626 * 109.26804 * 199.99607 * 12 10 9 15 15 C 1.47166 * 110.25727 * 187.30880 * 14 12 10 16 16 C 1.52904 * 108.49205 * 71.28820 * 15 14 12 17 17 C 1.50721 * 109.94078 * 309.56656 * 16 15 14 18 18 C 1.38679 * 118.48096 * 196.79382 * 17 16 15 19 19 C 1.38037 * 120.34932 * 180.25061 * 18 17 16 20 20 C 1.38259 * 119.82369 * 359.97438 * 19 18 17 21 21 C 1.38011 * 119.87121 * 359.92190 * 20 19 18 22 22 C 1.37830 * 121.66599 * 16.88669 * 17 16 15 23 23 H 0.97008 * 119.99576 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00589 * 359.97438 * 9 7 2 25 25 H 1.00895 * 111.00160 * 310.73826 * 14 12 10 26 26 H 1.09005 * 109.63501 * 190.98746 * 15 14 12 27 27 H 1.08995 * 109.63593 * 311.58798 * 15 14 12 28 28 H 1.08997 * 109.39368 * 69.72184 * 16 15 14 29 29 H 1.09004 * 109.39171 * 189.43138 * 16 15 14 30 30 H 1.08002 * 119.82335 * 0.22880 * 18 17 16 31 31 H 1.07989 * 120.08524 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.06492 * 179.97438 * 20 19 18 33 33 H 1.08005 * 119.81298 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8896 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 1 0.3858 -4.7833 0.6667 14 7 2.1278 -5.9325 0.4723 15 6 1.4731 -7.2413 0.3166 16 6 1.4152 -7.5805 -1.1732 17 6 0.8367 -6.4205 -1.9423 18 6 0.3751 -6.6457 -3.2305 19 6 -0.1574 -5.6099 -3.9716 20 6 -0.2312 -4.3415 -3.4265 21 6 0.2260 -4.1169 -2.1438 22 6 0.7608 -5.1568 -1.3974 23 1 -0.4850 0.8401 0.0004 24 1 0.3532 -2.3907 0.0002 25 1 3.0127 -5.9110 -0.0119 26 1 2.0475 -8.0032 0.8437 27 1 0.4621 -7.1955 0.7213 28 1 2.4214 -7.7898 -1.5361 29 1 0.7887 -8.4604 -1.3199 30 1 0.4327 -7.6366 -3.6563 31 1 -0.5152 -5.7899 -4.9744 32 1 -0.6467 -3.5282 -4.0029 33 1 0.1674 -3.1257 -1.7187 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043595808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:59 Heat of formation + Delta-G solvation = -32.168305 kcal Electronic energy + Delta-G solvation = -17721.886707 eV Core-core repulsion = 14938.978822 eV Total energy + Delta-G solvation = -2782.907885 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59429 -39.62618 -37.44356 -35.98497 -33.95163 -33.02085 -31.64929 -30.13838 -27.51781 -25.52375 -24.21119 -23.34191 -21.43292 -20.87010 -19.94586 -18.20706 -17.49535 -16.99348 -16.47868 -16.30076 -15.84201 -15.46717 -15.34709 -14.95804 -14.57190 -14.35415 -14.00610 -13.60986 -13.36832 -13.25675 -12.95812 -12.81402 -12.47344 -12.39095 -12.16075 -12.11236 -11.71251 -11.52176 -10.56619 -10.05888 -9.71021 -9.58819 -9.39221 -8.50387 -5.99973 0.34425 0.42513 1.33929 1.39941 1.54390 1.94489 2.26181 2.72317 3.01201 3.15428 3.43430 3.74725 3.77637 3.95679 4.19032 4.20983 4.25745 4.27136 4.45108 4.62126 4.67532 4.76233 4.95913 4.99794 5.07671 5.20391 5.37418 5.48729 5.59335 5.61286 5.85154 6.01866 6.08340 6.32910 6.51533 7.06060 7.45798 7.99917 8.66921 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.007098 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.191266 B = 3943.604778 C = 4623.310346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.562 5.562 10 C 0.451 3.549 11 O -0.623 6.623 12 C 0.128 3.872 13 H 0.103 0.897 14 N -0.671 5.671 15 C 0.053 3.947 16 C -0.112 4.112 17 C -0.084 4.084 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.125 4.125 23 H 0.279 0.721 24 H 0.395 0.605 25 H 0.346 0.654 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -13.789 -5.758 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.199 5.199 10 C 0.238 3.762 11 O -0.510 6.510 12 C 0.014 3.986 13 H 0.120 0.880 14 N -0.301 5.301 15 C -0.075 4.075 16 C -0.150 4.150 17 C -0.084 4.084 18 C -0.139 4.139 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.127 4.127 23 H 0.089 0.911 24 H 0.230 0.770 25 H 0.166 0.834 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.148 0.852 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.236 -13.550 -5.047 14.817 hybrid contribution -0.128 1.298 -0.815 1.538 sum -3.365 -12.252 -5.862 13.993 Atomic orbital electron populations 1.69682 1.06837 1.29402 1.49826 1.26052 0.96548 1.02377 0.95958 0.84860 0.78016 0.76948 0.78443 1.19823 1.19451 1.19415 1.19727 0.92744 0.83846 1.50258 0.90257 1.42019 1.09097 1.04586 1.64185 1.20402 0.87921 0.85680 0.82187 1.90457 1.15617 1.87703 1.57213 1.20096 0.95518 0.90291 0.92718 0.87983 1.60813 1.05938 1.02858 1.60512 1.22310 1.00640 0.89816 0.94745 1.21265 1.02124 0.95966 0.95691 1.19901 0.99009 0.93655 0.95858 1.21434 0.98718 1.00615 0.93122 1.21468 0.98835 0.92058 1.00920 1.21309 1.00384 0.98645 0.94824 1.21524 0.98889 0.98831 0.96213 1.20161 1.01325 0.94674 0.96543 0.91131 0.76994 0.83431 0.87355 0.90326 0.89729 0.87031 0.82613 0.82849 0.85211 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.95 13.05 21.66 0.28 -49.67 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 3 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.34 -19.57 9.68 84.04 0.81 -18.76 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.90 16 9 N -0.56 -30.09 4.11 -306.98 -1.26 -31.35 16 10 C 0.45 22.97 6.43 87.66 0.56 23.54 16 11 O -0.62 -36.15 15.55 -3.07 -0.05 -36.20 16 12 C 0.13 5.05 2.92 43.45 0.13 5.18 16 13 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 14 N -0.67 -23.27 6.51 -499.64 -3.25 -26.52 16 15 C 0.05 1.27 6.62 86.22 0.57 1.84 16 16 C -0.11 -2.36 5.82 29.82 0.17 -2.19 16 17 C -0.08 -2.37 5.77 -19.85 -0.11 -2.49 16 18 C -0.12 -2.87 9.66 22.33 0.22 -2.65 16 19 C -0.12 -2.85 10.05 22.23 0.22 -2.63 16 20 C -0.13 -4.20 10.05 22.22 0.22 -3.98 16 21 C -0.14 -5.21 9.08 22.33 0.20 -5.00 16 22 C -0.12 -4.50 5.46 -19.86 -0.11 -4.60 16 23 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 24 H 0.39 20.39 6.76 -92.71 -0.63 19.77 16 25 H 0.35 12.94 7.85 -89.70 -0.70 12.24 16 26 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.08 1.80 8.05 -2.39 -0.02 1.79 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.15 2.68 8.06 -2.92 -0.02 2.66 16 32 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.11 4.71 5.28 -2.91 -0.02 4.69 16 Total: -1.00 -68.71 277.27 0.92 -67.79 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.18 Total: 42.24 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.36 Total: -11.77 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -4.23 Total: -107.54 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.05 Total: -36.20 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.71 0.92 -67.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043595808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.618 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds