Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48501 * 109.46876 * 239.99836 * 3 2 1 5 5 H 1.48498 * 109.46818 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47192 * 119.99972 * 3 2 1 7 7 C 1.39909 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00093 * 185.44905 * 7 2 1 9 9 C 1.41158 * 119.99828 * 5.44373 * 7 2 1 10 10 C 1.40875 * 120.16276 * 34.39435 * 9 7 2 11 11 C 1.36371 * 119.82626 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17190 * 0.02562 * 11 10 9 13 13 N 1.39231 * 119.83608 * 179.71828 * 12 11 10 14 14 C 1.34779 * 120.00058 * 145.31020 * 13 12 11 15 15 O 1.21275 * 119.99969 * 354.41742 * 14 13 12 16 16 C 1.50701 * 120.00135 * 174.42738 * 14 13 12 17 17 H 1.09000 * 115.55381 * 34.26803 * 16 14 13 18 18 C 1.53006 * 117.49557 * 248.60511 * 16 14 13 19 19 C 1.52994 * 117.49821 * 179.97438 * 16 14 13 20 20 H 1.09008 * 117.49676 * 214.97809 * 19 16 14 21 21 N 1.46901 * 117.50033 * 359.97438 * 19 16 14 22 22 C 1.39489 * 120.33205 * 359.97438 * 12 11 10 23 23 C 1.36378 * 120.16713 * 0.02562 * 22 12 11 24 24 H 0.96999 * 120.00008 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.08375 * 0.04298 * 10 9 7 26 26 H 1.08003 * 119.91363 * 180.02562 * 11 10 9 27 27 H 0.97003 * 120.00212 * 325.31126 * 13 12 11 28 28 H 1.08998 * 117.49726 * 359.97438 * 18 16 14 29 29 H 1.08998 * 117.49716 * 145.01571 * 18 16 14 30 30 H 1.00907 * 110.99909 * 179.97438 * 21 19 16 31 31 H 1.00894 * 111.00044 * 303.95460 * 21 19 16 32 32 H 1.07993 * 119.91600 * 180.02562 * 22 12 11 33 33 H 1.07998 * 120.08115 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0846 -1.2137 0.0894 9 6 1.3072 -2.4314 -0.1149 10 6 0.1438 -2.5070 -0.9056 11 6 -0.5284 -3.6888 -1.0119 12 6 -0.0671 -4.8206 -0.3398 13 7 -0.7622 -6.0221 -0.4485 14 6 -0.0910 -7.1908 -0.4538 15 8 1.1217 -7.1936 -0.4661 16 6 -0.8474 -8.4942 -0.4446 17 1 -1.7917 -8.4936 -0.9889 18 6 -0.7611 -9.3522 0.8193 19 6 -0.0282 -9.7864 -0.4519 20 1 -0.4336 -10.6362 -1.0012 21 7 1.4354 -9.6616 -0.4678 22 6 1.0841 -4.7535 0.4450 23 6 1.7670 -3.5787 0.5609 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2146 -1.6315 -1.4265 26 1 -1.4203 -3.7485 -1.6181 27 1 -1.7295 -6.0180 -0.5204 28 1 -0.1569 -8.9740 1.6440 29 1 -1.6485 -9.9162 1.1062 30 1 1.8757 -10.5695 -0.4710 31 1 1.7426 -9.1077 -1.2531 32 1 1.4355 -5.6340 0.9621 33 1 2.6584 -3.5284 1.1686 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051600738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -4.295657 kcal Electronic energy + Delta-G solvation = -16954.646434 eV Core-core repulsion = 14172.947197 eV Total energy + Delta-G solvation = -2781.699237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28894 -39.38354 -37.57203 -35.99527 -34.65919 -32.08108 -31.47884 -30.75138 -27.24906 -24.98490 -23.28934 -22.50960 -22.01098 -20.70392 -19.23847 -18.32641 -18.09935 -17.05990 -16.46975 -16.18902 -15.68657 -15.56162 -15.31254 -14.71119 -14.54075 -14.08625 -13.99284 -13.61610 -13.33934 -12.98781 -12.80835 -12.68452 -12.34645 -11.85980 -11.78380 -11.57734 -11.21960 -11.11183 -10.70574 -10.36318 -9.49015 -9.41811 -8.73011 -8.54714 -6.30425 0.79868 1.11322 1.40001 1.46146 1.51551 1.78570 2.24866 2.36079 2.78662 2.94156 3.41519 3.68603 3.87642 3.95075 4.19719 4.37904 4.42853 4.47945 4.75984 4.89321 4.92825 5.09671 5.15138 5.17714 5.34097 5.44298 5.66953 5.88919 6.03215 6.11766 6.34977 6.39171 6.65639 6.67853 6.82590 6.95560 6.99775 7.50925 8.42884 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.060912 B = 0.004524 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.568858 B = 6187.555905 C = 6458.062963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.073 3.927 10 C -0.155 4.155 11 C -0.119 4.119 12 C 0.026 3.974 13 N -0.649 5.649 14 C 0.520 3.480 15 O -0.549 6.549 16 C -0.190 4.190 17 H 0.157 0.843 18 C -0.136 4.136 19 C 0.047 3.953 20 H 0.126 0.874 21 N -0.828 5.828 22 C -0.093 4.093 23 C -0.222 4.222 24 H 0.286 0.714 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.415 0.585 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.349 0.651 31 H 0.349 0.651 32 H 0.100 0.900 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -13.759 -2.033 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.071 3.929 10 C -0.175 4.175 11 C -0.139 4.139 12 C -0.068 4.068 13 N -0.294 5.294 14 C 0.309 3.691 15 O -0.426 6.426 16 C -0.211 4.211 17 H 0.175 0.825 18 C -0.175 4.175 19 C -0.066 4.066 20 H 0.143 0.857 21 N -0.362 5.362 22 C -0.113 4.113 23 C -0.242 4.242 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.252 0.748 28 H 0.094 0.906 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.118 0.882 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.538 -13.274 -1.339 14.445 hybrid contribution 0.033 0.560 -0.752 0.938 sum -5.505 -12.714 -2.091 14.012 Atomic orbital electron populations 1.69832 1.08557 1.30242 1.38101 1.26673 0.95747 1.04091 0.91431 0.85204 0.78598 0.75735 0.79815 1.18565 1.19034 1.18809 1.19686 0.94952 0.91462 1.47484 0.91121 1.17973 0.92778 0.92704 0.89434 1.20920 0.98615 0.96538 1.01470 1.20539 1.00836 0.92452 1.00111 1.17281 0.98154 0.86442 1.04884 1.42993 1.10432 1.03544 1.72462 1.20458 0.87759 0.85111 0.75783 1.90670 1.15358 1.87324 1.49266 1.22431 1.02705 0.88561 1.07432 0.82536 1.23242 1.03077 1.00468 0.90684 1.22352 0.88055 0.95108 1.01087 0.85705 1.58197 1.04423 1.20695 1.52926 1.20346 0.96181 0.96472 0.98313 1.20913 1.03198 0.94469 1.05606 0.90342 0.87383 0.85754 0.74850 0.90582 0.84300 0.83756 0.83425 0.88210 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.63 10.96 21.82 0.24 -44.39 16 2 C 0.03 1.72 5.31 85.24 0.45 2.17 16 3 Si 0.99 39.49 29.56 68.60 2.03 41.52 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 7 C -0.51 -28.42 9.03 23.39 0.21 -28.21 16 8 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 9 C 0.07 4.15 5.50 -21.27 -0.12 4.04 16 10 C -0.16 -8.26 8.57 22.48 0.19 -8.07 16 11 C -0.12 -5.46 9.90 22.13 0.22 -5.24 16 12 C 0.03 1.16 6.26 38.57 0.24 1.40 16 13 N -0.65 -22.04 5.30 -303.11 -1.61 -23.64 16 14 C 0.52 17.33 7.32 87.66 0.64 17.98 16 15 O -0.55 -22.95 11.73 -3.01 -0.04 -22.99 16 16 C -0.19 -4.07 6.19 -11.54 -0.07 -4.14 16 17 H 0.16 2.17 8.14 -2.39 -0.02 2.15 16 18 C -0.14 -2.61 10.16 30.60 0.31 -2.30 16 19 C 0.05 0.90 7.08 44.92 0.32 1.22 16 20 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 21 N -0.83 -20.42 8.41 -168.65 -1.42 -21.84 16 22 C -0.09 -4.64 8.58 22.14 0.19 -4.45 16 23 C -0.22 -11.95 9.74 22.48 0.22 -11.73 16 24 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 25 H 0.11 5.93 6.47 -2.91 -0.02 5.91 16 26 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 27 H 0.41 10.64 8.82 -92.71 -0.82 9.82 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.35 6.54 9.08 -89.69 -0.81 5.73 16 31 H 0.35 9.83 7.59 -89.70 -0.68 9.14 16 32 H 0.10 4.97 6.51 -2.91 -0.02 4.95 16 33 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -68.72 284.22 0.87 -67.85 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: -1.15 Total: 40.82 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 2.81 Total: -37.33 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -2.79 Total: -89.88 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.04 Total: -22.99 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -68.72 0.87 -67.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051600738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.555 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds