Wall clock time and date at job start Mon Mar 30 2020 04:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48502 * 109.46826 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47236 * 120.00085 * 3 2 1 6 6 H 1.48500 * 109.47102 * 240.00451 * 3 2 1 7 7 C 1.39915 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99607 * 175.56266 * 7 2 1 9 9 C 1.41147 * 120.00298 * 355.55800 * 7 2 1 10 10 C 1.40863 * 120.16530 * 214.50814 * 9 7 2 11 11 C 1.36378 * 119.82877 * 179.69022 * 10 9 7 12 12 C 1.39480 * 120.16898 * 0.58701 * 11 10 9 13 13 N 1.39229 * 119.83697 * 179.73455 * 12 11 10 14 14 C 1.34778 * 119.99761 * 35.26420 * 13 12 11 15 15 O 1.21276 * 120.00595 * 355.71096 * 14 13 12 16 16 C 1.50707 * 119.99844 * 175.71164 * 14 13 12 17 17 H 1.08999 * 115.54791 * 325.72242 * 16 14 13 18 18 C 1.52997 * 117.49966 * 111.39122 * 16 14 13 19 19 C 1.52992 * 60.00052 * 107.49013 * 18 16 14 20 20 H 1.09005 * 117.50365 * 252.51220 * 19 18 16 21 21 N 1.46897 * 117.50311 * 107.48836 * 19 18 16 22 22 C 1.39482 * 120.32969 * 359.70958 * 12 11 10 23 23 C 1.36378 * 120.16994 * 359.97438 * 22 12 11 24 24 H 0.96997 * 119.99788 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.08662 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.91561 * 180.29234 * 11 10 9 27 27 H 0.96999 * 120.00242 * 215.27251 * 13 12 11 28 28 H 1.08996 * 117.50163 * 214.98202 * 18 16 14 29 29 H 1.09006 * 117.49623 * 0.02562 * 18 16 14 30 30 H 1.00904 * 111.00000 * 111.37625 * 21 19 18 31 31 H 1.00897 * 111.00698 * 235.33847 * 21 19 18 32 32 H 1.08004 * 119.91622 * 179.97438 * 22 12 11 33 33 H 1.08002 * 120.08054 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0965 1.6963 1.2124 6 1 3.0965 1.6963 -1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2131 -0.0729 9 6 1.3057 -2.4323 0.0936 10 6 1.8674 -3.5205 0.7896 11 6 1.1798 -4.6947 0.8817 12 6 -0.0712 -4.8236 0.2785 13 7 -0.7647 -6.0272 0.3721 14 6 -0.6824 -6.7666 1.4960 15 8 0.0558 -6.4236 2.3949 16 6 -1.5080 -8.0197 1.6356 17 1 -2.4906 -7.9902 1.1648 18 6 -0.7660 -9.3578 1.6387 19 6 -1.3704 -8.8152 2.9352 20 1 -0.6829 -8.4321 3.6894 21 7 -2.5730 -9.4807 3.4536 22 6 -0.6311 -3.7524 -0.4177 23 6 0.0417 -2.5700 -0.5129 24 1 -0.4850 0.8400 0.0004 25 1 2.8382 -3.4238 1.2530 26 1 1.6072 -5.5284 1.4190 27 1 -1.3069 -6.3337 -0.3715 28 1 -1.2606 -10.2086 1.1703 29 1 0.3193 -9.3317 1.5402 30 1 -2.3721 -9.9745 4.3103 31 1 -3.3240 -8.8198 3.5848 32 1 -1.6001 -3.8597 -0.8826 33 1 -0.3935 -1.7414 -1.0519 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051600740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:52 Heat of formation + Delta-G solvation = 9.591340 kcal Electronic energy + Delta-G solvation = -16767.731617 eV Core-core repulsion = 13986.634566 eV Total energy + Delta-G solvation = -2781.097051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93101 -37.78803 -36.47801 -34.39816 -32.90907 -31.33369 -29.58924 -28.91904 -25.56223 -23.55820 -21.64728 -21.17533 -20.49834 -19.45678 -17.53356 -17.22989 -16.43416 -15.50877 -15.26826 -15.04415 -14.63574 -14.21004 -13.85519 -13.12607 -12.93726 -12.64180 -12.16388 -12.07191 -11.72121 -11.37554 -11.16693 -11.06126 -10.90424 -10.73722 -10.34581 -10.03562 -9.49833 -9.43654 -9.14019 -8.94283 -8.86808 -7.55317 -6.87045 -6.62214 -4.34805 2.48905 2.94422 3.08090 3.09440 3.11648 3.23405 3.58855 3.82767 3.97734 4.29292 4.69382 4.75900 4.92154 5.17648 5.26711 5.60196 5.65856 5.79598 5.94128 6.19237 6.44084 6.75860 6.88584 6.92708 7.06492 7.14120 7.20737 7.29523 7.63300 7.74950 7.86760 8.05764 8.26681 8.31339 8.61901 8.75632 8.92203 8.99990 10.28820 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058578 B = 0.004259 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.878857 B = 6572.668908 C = 6661.582780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.002 3.998 13 N -0.646 5.646 14 C 0.526 3.474 15 O -0.534 6.534 16 C -0.182 4.182 17 H 0.124 0.876 18 C -0.138 4.138 19 C 0.042 3.958 20 H 0.103 0.897 21 N -0.822 5.822 22 C -0.120 4.120 23 C -0.142 4.142 24 H 0.278 0.722 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.397 0.603 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.349 0.651 31 H 0.346 0.654 32 H 0.091 0.909 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -11.557 1.118 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.091 4.091 13 N -0.288 5.288 14 C 0.313 3.687 15 O -0.412 6.412 16 C -0.204 4.204 17 H 0.142 0.858 18 C -0.177 4.177 19 C -0.070 4.070 20 H 0.120 0.880 21 N -0.353 5.353 22 C -0.140 4.140 23 C -0.162 4.162 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.230 0.770 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.109 0.891 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.269 -11.548 1.095 12.361 hybrid contribution -0.020 1.316 0.516 1.414 sum -4.289 -10.232 1.612 11.211 Atomic orbital electron populations 1.69754 1.07294 1.28818 1.38051 1.25883 0.94946 1.01167 0.92532 0.86239 0.79789 0.80076 0.79773 1.20428 1.19096 1.19044 1.19477 0.94727 0.90243 1.44809 0.90628 1.17715 0.92298 0.91968 0.88213 1.20806 1.01131 0.95011 1.05697 1.20395 0.92787 0.97884 0.99451 1.17292 0.94229 0.85855 1.11681 1.42906 1.48626 1.21168 1.16077 1.19607 0.82796 0.84135 0.82191 1.90674 1.39400 1.70767 1.40329 1.22391 1.01738 0.91992 1.04231 0.85838 1.23152 0.99852 0.94488 1.00186 1.22128 0.94916 0.99193 0.90775 0.87981 1.58402 1.07587 1.32458 1.36854 1.20326 0.98314 0.93127 1.02262 1.21195 0.97278 0.95592 1.02112 0.91084 0.88594 0.87532 0.76956 0.87481 0.88201 0.83850 0.84006 0.89056 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.22 10.59 55.55 0.59 -20.63 16 2 C 0.07 1.77 5.42 -17.33 -0.09 1.68 16 3 Si 0.92 19.07 29.56 -169.99 -5.03 14.05 16 4 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.41 9.03 -37.85 -0.34 -12.75 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.72 5.55 -106.81 -0.59 2.13 16 10 C -0.21 -5.29 9.74 -39.26 -0.38 -5.68 16 11 C -0.09 -2.07 8.61 -39.79 -0.34 -2.42 16 12 C 0.00 0.04 6.31 -83.57 -0.53 -0.49 16 13 N -0.65 -11.53 5.30 -9.74 -0.05 -11.58 16 14 C 0.53 9.29 7.44 -10.98 -0.08 9.21 16 15 O -0.53 -11.59 13.68 5.56 0.08 -11.52 16 16 C -0.18 -2.33 6.12 -91.77 -0.56 -2.89 16 17 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.14 -1.55 10.16 -26.74 -0.27 -1.82 16 19 C 0.04 0.50 6.62 -67.72 -0.45 0.05 16 20 H 0.10 1.38 7.67 -51.93 -0.40 0.98 16 21 N -0.82 -7.70 9.83 -4.67 -0.05 -7.74 16 22 C -0.12 -2.77 9.90 -39.79 -0.39 -3.16 16 23 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 24 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 25 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 26 H 0.11 2.56 6.22 -52.48 -0.33 2.23 16 27 H 0.40 5.59 8.82 -40.82 -0.36 5.23 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.35 2.63 9.08 -39.29 -0.36 2.28 16 31 H 0.35 2.93 9.08 -39.29 -0.36 2.58 16 32 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 LS Contribution 287.49 15.07 4.33 4.33 Total: -1.00 -30.40 287.49 -8.28 -38.68 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -3.78 Total: 14.55 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -4.38 Total: -20.14 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.49 Total: -39.95 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.40 -8.28 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051600740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.272 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds