Wall clock time and date at job start Mon Mar 30 2020 04:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48502 * 109.46826 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47236 * 120.00085 * 3 2 1 6 6 H 1.48500 * 109.47102 * 240.00451 * 3 2 1 7 7 C 1.39915 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99607 * 175.56266 * 7 2 1 9 9 C 1.41147 * 120.00298 * 355.55800 * 7 2 1 10 10 C 1.40863 * 120.16530 * 214.50814 * 9 7 2 11 11 C 1.36378 * 119.82877 * 179.69022 * 10 9 7 12 12 C 1.39480 * 120.16898 * 0.58701 * 11 10 9 13 13 N 1.39229 * 119.83697 * 179.73455 * 12 11 10 14 14 C 1.34778 * 119.99761 * 35.26420 * 13 12 11 15 15 O 1.21276 * 120.00595 * 355.71096 * 14 13 12 16 16 C 1.50707 * 119.99844 * 175.71164 * 14 13 12 17 17 H 1.08999 * 115.54791 * 325.72242 * 16 14 13 18 18 C 1.52997 * 117.49966 * 111.39122 * 16 14 13 19 19 C 1.52992 * 60.00052 * 107.49013 * 18 16 14 20 20 H 1.09005 * 117.50365 * 252.51220 * 19 18 16 21 21 N 1.46897 * 117.50311 * 107.48836 * 19 18 16 22 22 C 1.39482 * 120.32969 * 359.70958 * 12 11 10 23 23 C 1.36378 * 120.16994 * 359.97438 * 22 12 11 24 24 H 0.96997 * 119.99788 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.08662 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.91561 * 180.29234 * 11 10 9 27 27 H 0.96999 * 120.00242 * 215.27251 * 13 12 11 28 28 H 1.08996 * 117.50163 * 214.98202 * 18 16 14 29 29 H 1.09006 * 117.49623 * 0.02562 * 18 16 14 30 30 H 1.00904 * 111.00000 * 111.37625 * 21 19 18 31 31 H 1.00897 * 111.00698 * 235.33847 * 21 19 18 32 32 H 1.08004 * 119.91622 * 179.97438 * 22 12 11 33 33 H 1.08002 * 120.08054 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0965 1.6963 1.2124 6 1 3.0965 1.6963 -1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2131 -0.0729 9 6 1.3057 -2.4323 0.0936 10 6 1.8674 -3.5205 0.7896 11 6 1.1798 -4.6947 0.8817 12 6 -0.0712 -4.8236 0.2785 13 7 -0.7647 -6.0272 0.3721 14 6 -0.6824 -6.7666 1.4960 15 8 0.0558 -6.4236 2.3949 16 6 -1.5080 -8.0197 1.6356 17 1 -2.4906 -7.9902 1.1648 18 6 -0.7660 -9.3578 1.6387 19 6 -1.3704 -8.8152 2.9352 20 1 -0.6829 -8.4321 3.6894 21 7 -2.5730 -9.4807 3.4536 22 6 -0.6311 -3.7524 -0.4177 23 6 0.0417 -2.5700 -0.5129 24 1 -0.4850 0.8400 0.0004 25 1 2.8382 -3.4238 1.2530 26 1 1.6072 -5.5284 1.4190 27 1 -1.3069 -6.3337 -0.3715 28 1 -1.2606 -10.2086 1.1703 29 1 0.3193 -9.3317 1.5402 30 1 -2.3721 -9.9745 4.3103 31 1 -3.3240 -8.8198 3.5848 32 1 -1.6001 -3.8597 -0.8826 33 1 -0.3935 -1.7414 -1.0519 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051600740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:52 Heat of formation + Delta-G solvation = -11.447626 kcal Electronic energy + Delta-G solvation = -16768.643935 eV Core-core repulsion = 13986.634566 eV Total energy + Delta-G solvation = -2782.009369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40011 -39.40481 -37.78063 -36.13167 -34.71516 -32.21872 -31.50254 -30.76886 -27.28489 -25.01575 -23.31254 -22.54672 -21.99899 -20.89031 -19.29841 -18.69614 -18.04108 -17.05408 -16.46278 -16.33724 -15.96007 -15.70436 -15.36175 -14.83763 -14.56599 -14.09771 -13.99514 -13.62230 -13.25336 -13.06286 -12.88264 -12.77822 -12.48479 -11.90409 -11.80106 -11.41701 -11.33510 -11.22420 -10.82048 -10.60133 -9.75246 -9.49551 -8.75914 -8.52002 -6.35092 0.75476 1.11003 1.39187 1.42905 1.50981 1.65218 2.21195 2.25332 2.76440 2.83695 3.35990 3.64160 3.75576 3.83102 4.18622 4.29591 4.37577 4.50647 4.71516 4.90052 4.91495 5.06622 5.12664 5.13210 5.32646 5.41675 5.67274 5.88549 6.00170 6.10747 6.11692 6.36608 6.49169 6.64851 6.70708 6.94751 6.97695 7.35956 8.40658 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058578 B = 0.004259 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.878857 B = 6572.668908 C = 6661.582780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.073 0.927 9 C 0.069 3.931 10 C -0.222 4.222 11 C -0.097 4.097 12 C 0.016 3.984 13 N -0.639 5.639 14 C 0.524 3.476 15 O -0.579 6.579 16 C -0.181 4.181 17 H 0.152 0.848 18 C -0.122 4.122 19 C 0.042 3.958 20 H 0.080 0.920 21 N -0.814 5.814 22 C -0.118 4.118 23 C -0.159 4.159 24 H 0.285 0.715 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.419 0.581 28 H 0.131 0.869 29 H 0.093 0.907 30 H 0.359 0.641 31 H 0.352 0.648 32 H 0.126 0.874 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -12.696 0.828 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.091 0.909 9 C 0.066 3.934 10 C -0.242 4.242 11 C -0.117 4.117 12 C -0.077 4.077 13 N -0.283 5.283 14 C 0.313 3.687 15 O -0.459 6.459 16 C -0.202 4.202 17 H 0.169 0.831 18 C -0.161 4.161 19 C -0.071 4.071 20 H 0.098 0.902 21 N -0.347 5.347 22 C -0.138 4.138 23 C -0.179 4.179 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.256 0.744 28 H 0.149 0.851 29 H 0.111 0.889 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.144 0.856 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.643 -12.737 0.788 13.953 hybrid contribution 0.336 1.497 0.655 1.668 sum -5.307 -11.240 1.443 12.513 Atomic orbital electron populations 1.69817 1.08595 1.30089 1.38328 1.26749 0.95820 1.04313 0.91483 0.85142 0.78501 0.75500 0.79845 1.19161 1.19021 1.18193 1.19726 0.94907 0.91374 1.47038 0.90866 1.18028 0.93377 0.92637 0.89319 1.20934 1.01545 0.95572 1.06195 1.20514 0.93769 0.97466 0.99991 1.17362 0.93533 0.87412 1.09397 1.42848 1.48375 1.19696 1.17358 1.20463 0.82182 0.84953 0.81066 1.90661 1.41382 1.72057 1.41767 1.22307 1.02194 0.89989 1.05741 0.83089 1.23239 0.99605 0.93879 0.99330 1.22049 0.95576 0.99041 0.90399 0.90184 1.58436 1.06538 1.32067 1.37627 1.20581 0.99308 0.92104 1.01797 1.21189 0.97467 0.96503 1.02787 0.90407 0.88599 0.87527 0.74384 0.85068 0.88890 0.82627 0.83270 0.85649 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.61 10.59 21.82 0.23 -44.38 16 2 C 0.03 1.47 5.42 85.24 0.46 1.93 16 3 Si 0.99 39.31 29.56 68.60 2.03 41.34 16 4 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.50 -27.78 9.03 23.39 0.21 -27.57 16 8 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 9 C 0.07 3.85 5.55 -21.28 -0.12 3.73 16 10 C -0.22 -11.82 9.74 22.48 0.22 -11.60 16 11 C -0.10 -4.80 8.61 22.14 0.19 -4.61 16 12 C 0.02 0.73 6.31 38.57 0.24 0.97 16 13 N -0.64 -21.54 5.30 -303.11 -1.61 -23.14 16 14 C 0.52 17.71 7.44 87.66 0.65 18.36 16 15 O -0.58 -25.02 13.68 -3.02 -0.04 -25.06 16 16 C -0.18 -4.11 6.12 -11.54 -0.07 -4.18 16 17 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.12 -2.37 10.16 30.59 0.31 -2.06 16 19 C 0.04 0.90 6.62 44.91 0.30 1.20 16 20 H 0.08 2.10 7.67 -2.38 -0.02 2.08 16 21 N -0.81 -12.86 9.83 -168.69 -1.66 -14.51 16 22 C -0.12 -5.34 9.90 22.14 0.22 -5.12 16 23 C -0.16 -8.41 8.61 22.48 0.19 -8.21 16 24 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 25 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 26 H 0.11 5.21 6.22 -2.91 -0.02 5.20 16 27 H 0.42 10.48 8.82 -92.71 -0.82 9.66 16 28 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.36 4.50 9.08 -89.69 -0.81 3.68 16 31 H 0.35 4.94 9.08 -89.70 -0.81 4.12 16 32 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 33 H 0.12 6.55 6.13 -2.91 -0.02 6.53 16 Total: -1.00 -67.27 287.49 0.49 -66.78 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -1.28 Total: 36.15 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 2.81 Total: -37.17 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -3.04 Total: -82.04 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.04 Total: -25.06 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -67.27 0.49 -66.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051600740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.337 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds