Wall clock time and date at job start Mon Mar 30 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86793 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47436 * 270.00001 * 3 2 1 5 5 H 1.48505 * 109.47379 * 149.99726 * 3 2 1 6 6 H 1.48500 * 109.47206 * 30.00073 * 3 2 1 7 7 C 1.39912 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 153.75112 * 7 2 1 9 9 C 1.41150 * 120.00220 * 333.75229 * 7 2 1 10 10 C 1.40866 * 120.16349 * 330.15874 * 9 7 2 11 11 C 1.36375 * 119.83126 * 179.67308 * 10 9 7 12 12 C 1.39488 * 120.16445 * 0.62574 * 11 10 9 13 13 N 1.39233 * 119.83061 * 179.69429 * 12 11 10 14 14 C 1.34771 * 120.00333 * 31.51994 * 13 12 11 15 15 O 1.21274 * 120.00108 * 4.97779 * 14 13 12 16 16 C 1.50704 * 120.00143 * 184.97956 * 14 13 12 17 17 H 1.09002 * 115.54933 * 34.41508 * 16 14 13 18 18 C 1.53004 * 117.49737 * 248.74754 * 16 14 13 19 19 C 1.52998 * 117.50026 * 180.09030 * 16 14 13 20 20 H 1.09000 * 117.49934 * 359.97438 * 19 16 14 21 21 N 1.46902 * 117.49621 * 214.97909 * 19 16 14 22 22 C 1.39474 * 120.33006 * 359.66889 * 12 11 10 23 23 C 1.36382 * 120.17426 * 0.02562 * 22 12 11 24 24 H 0.96997 * 120.00535 * 174.20358 * 1 2 3 25 25 H 1.08005 * 120.08577 * 359.97394 * 10 9 7 26 26 H 1.07993 * 119.92215 * 180.32152 * 11 10 9 27 27 H 0.97006 * 119.99553 * 211.51913 * 13 12 11 28 28 H 1.08996 * 117.49817 * 359.97438 * 18 16 14 29 29 H 1.09002 * 117.49718 * 144.99877 * 18 16 14 30 30 H 1.00898 * 110.99738 * 179.97438 * 21 19 16 31 31 H 1.00898 * 111.00121 * 303.95239 * 21 19 16 32 32 H 1.08001 * 119.91234 * 180.02562 * 22 12 11 33 33 H 1.07997 * 120.08836 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 3.5403 1.4401 0.7001 6 1 1.4403 2.6526 0.7000 7 6 2.0082 -1.2117 0.0005 8 1 3.0047 -1.2601 -0.4131 9 6 1.4116 -2.3708 0.5417 10 6 0.4768 -2.2623 1.5899 11 6 -0.1005 -3.3862 2.1031 12 6 0.2423 -4.6418 1.6015 13 7 -0.3466 -5.7851 2.1350 14 6 -1.6051 -5.7338 2.6145 15 8 -2.2567 -4.7175 2.4998 16 6 -2.2027 -6.9394 3.2931 17 1 -1.5063 -7.5466 3.8717 18 6 -3.3413 -7.6639 2.5723 19 6 -3.6362 -6.8188 3.8140 20 1 -4.1470 -5.8673 3.6663 21 7 -3.9689 -7.5305 5.0554 22 6 1.1716 -4.7576 0.5680 23 6 1.7527 -3.6423 0.0404 24 1 -0.4851 -0.8357 -0.0848 25 1 0.2143 -1.2911 1.9828 26 1 -0.8212 -3.3043 2.9032 27 1 0.1490 -6.6186 2.1616 28 1 -3.6585 -7.2683 1.6075 29 1 -3.3941 -8.7476 2.6767 30 1 -4.9346 -7.3840 5.3084 31 1 -3.7610 -8.5145 4.9749 32 1 1.4318 -5.7332 0.1845 33 1 2.4724 -3.7336 -0.7596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051600742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:55 Heat of formation + Delta-G solvation = 1.913378 kcal Electronic energy + Delta-G solvation = -16849.797733 eV Core-core repulsion = 14068.367740 eV Total energy + Delta-G solvation = -2781.429993 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96785 -37.96441 -36.67128 -34.57803 -32.95746 -31.25720 -29.66372 -28.76953 -25.38618 -23.52816 -21.80250 -21.42404 -20.68143 -19.48329 -17.89082 -17.55493 -16.45970 -15.73704 -15.16796 -14.64143 -14.40627 -14.04341 -13.93632 -13.32713 -12.74852 -12.59235 -12.37837 -12.35484 -11.95084 -11.66230 -11.35345 -11.10124 -11.02334 -10.52015 -10.38100 -10.03698 -9.77441 -9.35186 -9.11337 -8.77416 -8.67503 -7.74634 -7.24012 -7.02116 -4.34881 2.44527 2.90462 3.00064 3.18538 3.31900 3.39007 3.50249 3.87325 4.05608 4.29054 4.59488 4.70339 4.75899 4.94901 5.24658 5.47616 5.52433 5.80913 5.84613 6.02406 6.26701 6.65836 6.78104 6.84246 6.91917 7.11851 7.13276 7.39559 7.49509 7.77538 7.79234 7.85054 8.18082 8.24141 8.30649 8.69121 8.82962 8.93617 10.09743 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.004626 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.776329 B = 6051.192888 C = 6451.423776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.076 0.924 9 C 0.093 3.907 10 C -0.204 4.204 11 C -0.069 4.069 12 C -0.016 4.016 13 N -0.646 5.646 14 C 0.528 3.472 15 O -0.531 6.531 16 C -0.180 4.180 17 H 0.121 0.879 18 C -0.194 4.194 19 C 0.066 3.934 20 H 0.133 0.867 21 N -0.816 5.816 22 C -0.095 4.095 23 C -0.215 4.215 24 H 0.299 0.701 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.396 0.604 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.351 0.649 31 H 0.342 0.658 32 H 0.092 0.908 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -12.485 4.890 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.184 4.184 3 Si 0.890 3.110 4 H -0.203 1.203 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.224 4.224 11 C -0.089 4.089 12 C -0.108 4.108 13 N -0.288 5.288 14 C 0.315 3.685 15 O -0.408 6.408 16 C -0.202 4.202 17 H 0.139 0.861 18 C -0.234 4.234 19 C -0.047 4.047 20 H 0.151 0.849 21 N -0.344 5.344 22 C -0.116 4.116 23 C -0.235 4.235 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.229 0.771 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.110 0.890 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.121 -9.643 5.266 11.735 hybrid contribution -0.077 -2.837 -0.718 2.928 sum -4.199 -12.480 4.547 13.931 Atomic orbital electron populations 1.70426 1.08214 1.34333 1.28694 1.27008 0.95645 1.04271 0.91444 0.83643 0.75744 0.73780 0.77855 1.20334 1.20048 1.19830 1.20490 1.03568 0.94349 1.36897 0.90607 1.17714 0.90560 0.92653 0.90038 1.20801 1.04432 0.96950 1.00242 1.20413 0.98305 0.91334 0.98882 1.17120 1.05153 0.85616 1.02885 1.42876 1.13739 1.12036 1.60105 1.19503 0.81424 0.88282 0.79330 1.90691 1.60537 1.32425 1.57194 1.22405 0.93522 0.99723 1.04566 0.86079 1.23679 1.01820 0.98763 0.99131 1.22304 0.96096 0.99259 0.87064 0.84930 1.58302 1.28158 1.15579 1.32372 1.20100 0.98665 0.97391 0.95404 1.20558 1.06909 0.92474 1.03566 0.88749 0.87738 0.87505 0.77108 0.87999 0.88169 0.83524 0.84463 0.89013 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.89 12.49 55.55 0.69 -21.20 16 2 C 0.04 1.00 4.87 -17.33 -0.08 0.92 16 3 Si 1.07 22.01 30.00 -169.99 -5.10 16.91 16 4 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.53 -14.17 8.94 -37.85 -0.34 -14.51 16 8 H 0.08 1.97 7.97 -52.49 -0.42 1.56 16 9 C 0.09 2.52 5.18 -106.81 -0.55 1.97 16 10 C -0.20 -5.49 8.00 -39.26 -0.31 -5.80 16 11 C -0.07 -1.75 8.58 -39.79 -0.34 -2.09 16 12 C -0.02 -0.35 6.33 -83.57 -0.53 -0.88 16 13 N -0.65 -11.63 5.32 -9.74 -0.05 -11.68 16 14 C 0.53 9.56 7.36 -10.99 -0.08 9.48 16 15 O -0.53 -11.90 13.77 5.56 0.08 -11.83 16 16 C -0.18 -2.33 6.12 -91.77 -0.56 -2.89 16 17 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.19 -2.04 9.94 -26.69 -0.27 -2.30 16 19 C 0.07 0.77 6.75 -67.68 -0.46 0.32 16 20 H 0.13 1.80 7.67 -51.93 -0.40 1.41 16 21 N -0.82 -7.49 9.90 -4.64 -0.05 -7.53 16 22 C -0.10 -2.11 9.89 -39.79 -0.39 -2.51 16 23 C -0.22 -5.28 9.74 -39.26 -0.38 -5.66 16 24 H 0.30 8.60 6.97 -40.82 -0.28 8.31 16 25 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 26 H 0.11 2.71 6.24 -52.49 -0.33 2.38 16 27 H 0.40 5.56 8.80 -40.82 -0.36 5.21 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.35 2.53 9.08 -39.29 -0.36 2.18 16 31 H 0.34 2.42 8.78 -39.29 -0.35 2.08 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -31.30 287.36 -8.15 -39.46 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -3.76 Total: 15.51 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -4.30 Total: -23.97 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.60 Total: -40.42 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.10 Total: 16.91 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.30 -8.15 -39.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051600742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.371 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds