Wall clock time and date at job start Mon Mar 30 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86793 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47436 * 270.00001 * 3 2 1 5 5 H 1.48505 * 109.47379 * 149.99726 * 3 2 1 6 6 H 1.48500 * 109.47206 * 30.00073 * 3 2 1 7 7 C 1.39912 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 153.75112 * 7 2 1 9 9 C 1.41150 * 120.00220 * 333.75229 * 7 2 1 10 10 C 1.40866 * 120.16349 * 330.15874 * 9 7 2 11 11 C 1.36375 * 119.83126 * 179.67308 * 10 9 7 12 12 C 1.39488 * 120.16445 * 0.62574 * 11 10 9 13 13 N 1.39233 * 119.83061 * 179.69429 * 12 11 10 14 14 C 1.34771 * 120.00333 * 31.51994 * 13 12 11 15 15 O 1.21274 * 120.00108 * 4.97779 * 14 13 12 16 16 C 1.50704 * 120.00143 * 184.97956 * 14 13 12 17 17 H 1.09002 * 115.54933 * 34.41508 * 16 14 13 18 18 C 1.53004 * 117.49737 * 248.74754 * 16 14 13 19 19 C 1.52998 * 117.50026 * 180.09030 * 16 14 13 20 20 H 1.09000 * 117.49934 * 359.97438 * 19 16 14 21 21 N 1.46902 * 117.49621 * 214.97909 * 19 16 14 22 22 C 1.39474 * 120.33006 * 359.66889 * 12 11 10 23 23 C 1.36382 * 120.17426 * 0.02562 * 22 12 11 24 24 H 0.96997 * 120.00535 * 174.20358 * 1 2 3 25 25 H 1.08005 * 120.08577 * 359.97394 * 10 9 7 26 26 H 1.07993 * 119.92215 * 180.32152 * 11 10 9 27 27 H 0.97006 * 119.99553 * 211.51913 * 13 12 11 28 28 H 1.08996 * 117.49817 * 359.97438 * 18 16 14 29 29 H 1.09002 * 117.49718 * 144.99877 * 18 16 14 30 30 H 1.00898 * 110.99738 * 179.97438 * 21 19 16 31 31 H 1.00898 * 111.00121 * 303.95239 * 21 19 16 32 32 H 1.08001 * 119.91234 * 180.02562 * 22 12 11 33 33 H 1.07997 * 120.08836 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 3.5403 1.4401 0.7001 6 1 1.4403 2.6526 0.7000 7 6 2.0082 -1.2117 0.0005 8 1 3.0047 -1.2601 -0.4131 9 6 1.4116 -2.3708 0.5417 10 6 0.4768 -2.2623 1.5899 11 6 -0.1005 -3.3862 2.1031 12 6 0.2423 -4.6418 1.6015 13 7 -0.3466 -5.7851 2.1350 14 6 -1.6051 -5.7338 2.6145 15 8 -2.2567 -4.7175 2.4998 16 6 -2.2027 -6.9394 3.2931 17 1 -1.5063 -7.5466 3.8717 18 6 -3.3413 -7.6639 2.5723 19 6 -3.6362 -6.8188 3.8140 20 1 -4.1470 -5.8673 3.6663 21 7 -3.9689 -7.5305 5.0554 22 6 1.1716 -4.7576 0.5680 23 6 1.7527 -3.6423 0.0404 24 1 -0.4851 -0.8357 -0.0848 25 1 0.2143 -1.2911 1.9828 26 1 -0.8212 -3.3043 2.9032 27 1 0.1490 -6.6186 2.1616 28 1 -3.6585 -7.2683 1.6075 29 1 -3.3941 -8.7476 2.6767 30 1 -4.9346 -7.3840 5.3084 31 1 -3.7610 -8.5145 4.9749 32 1 1.4318 -5.7332 0.1845 33 1 2.4724 -3.7336 -0.7596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051600742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:54 Heat of formation + Delta-G solvation = -20.561603 kcal Electronic energy + Delta-G solvation = -16850.772321 eV Core-core repulsion = 14068.367740 eV Total energy + Delta-G solvation = -2782.404581 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46282 -39.59490 -37.98780 -36.36328 -34.76987 -32.15844 -31.60781 -30.61548 -27.13130 -25.01167 -23.40741 -22.83086 -22.22427 -20.93256 -19.85815 -18.84916 -18.07937 -16.84495 -16.51424 -16.24684 -16.03623 -15.66978 -15.20747 -15.06314 -14.52501 -14.30331 -13.93583 -13.57752 -13.40542 -13.27807 -12.97140 -12.73321 -12.43005 -11.98117 -11.92894 -11.65373 -11.47219 -11.12303 -10.87275 -10.57700 -9.71953 -9.50642 -9.25390 -8.94083 -6.39893 0.66926 0.91227 1.46270 1.50884 1.71064 1.79877 2.19013 2.33559 2.65574 2.85666 3.37729 3.50046 3.68390 3.82581 4.01048 4.15622 4.26888 4.31270 4.67100 4.73557 4.89461 4.96109 4.98077 5.02423 5.25603 5.40749 5.61019 5.72754 5.81582 5.90333 6.07778 6.22069 6.33358 6.54937 6.65149 6.74646 6.92894 7.33501 8.02596 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.004626 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.776329 B = 6051.192888 C = 6451.423776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.001 3.999 3 Si 1.119 2.881 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.274 1.274 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.064 3.936 10 C -0.222 4.222 11 C -0.087 4.087 12 C 0.003 3.997 13 N -0.638 5.638 14 C 0.524 3.476 15 O -0.581 6.581 16 C -0.187 4.187 17 H 0.150 0.850 18 C -0.167 4.167 19 C 0.063 3.937 20 H 0.106 0.894 21 N -0.816 5.816 22 C -0.090 4.090 23 C -0.221 4.221 24 H 0.278 0.722 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.420 0.580 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.362 0.638 31 H 0.358 0.642 32 H 0.139 0.861 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -15.284 5.138 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.214 4.214 3 Si 0.936 3.064 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.062 3.938 10 C -0.242 4.242 11 C -0.107 4.107 12 C -0.090 4.090 13 N -0.282 5.282 14 C 0.313 3.687 15 O -0.461 6.461 16 C -0.209 4.209 17 H 0.167 0.833 18 C -0.207 4.207 19 C -0.051 4.051 20 H 0.124 0.876 21 N -0.347 5.347 22 C -0.110 4.110 23 C -0.241 4.241 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.257 0.743 28 H 0.107 0.893 29 H 0.157 0.843 30 H 0.178 0.822 31 H 0.173 0.827 32 H 0.157 0.843 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.593 -12.524 5.523 14.151 hybrid contribution -0.332 -2.200 -0.713 2.337 sum -3.925 -14.724 4.810 15.979 Atomic orbital electron populations 1.70563 1.09178 1.32828 1.31903 1.28511 0.95538 1.07759 0.89599 0.83010 0.74822 0.69514 0.79083 1.18117 1.18562 1.19837 1.20706 1.04011 0.95394 1.38700 0.90351 1.18023 0.91183 0.94153 0.90478 1.20684 1.05737 0.96507 1.01248 1.20457 0.98545 0.92447 0.99232 1.17258 1.03831 0.86187 1.01763 1.42828 1.14121 1.11589 1.59664 1.20476 0.80894 0.89213 0.78120 1.90683 1.61750 1.34895 1.58806 1.22374 0.94543 0.98213 1.05779 0.83283 1.23768 0.98579 1.00554 0.97765 1.22140 0.94813 0.99176 0.88931 0.87623 1.58220 1.29194 1.16539 1.30752 1.20482 0.97311 0.98824 0.94359 1.20853 1.07087 0.92293 1.03833 0.91059 0.90254 0.88517 0.74260 0.89335 0.84286 0.82243 0.82698 0.84288 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.60 12.49 21.82 0.27 -47.33 16 2 C 0.00 0.06 4.87 85.24 0.42 0.48 16 3 Si 1.12 44.95 30.00 68.60 2.06 47.01 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.56 -31.17 8.94 23.39 0.21 -30.96 16 8 H 0.08 4.17 7.97 -2.91 -0.02 4.14 16 9 C 0.06 3.58 5.18 -21.28 -0.11 3.47 16 10 C -0.22 -12.53 8.00 22.48 0.18 -12.35 16 11 C -0.09 -4.50 8.58 22.14 0.19 -4.31 16 12 C 0.00 0.14 6.33 38.57 0.24 0.38 16 13 N -0.64 -21.56 5.32 -303.12 -1.61 -23.18 16 14 C 0.52 18.33 7.36 87.66 0.64 18.97 16 15 O -0.58 -26.52 13.77 -3.01 -0.04 -26.56 16 16 C -0.19 -4.31 6.12 -11.54 -0.07 -4.38 16 17 H 0.15 2.63 8.14 -2.39 -0.02 2.62 16 18 C -0.17 -2.93 9.94 30.62 0.30 -2.63 16 19 C 0.06 1.36 6.75 44.94 0.30 1.66 16 20 H 0.11 2.88 7.67 -2.39 -0.02 2.86 16 21 N -0.82 -12.61 9.90 -168.58 -1.67 -14.28 16 22 C -0.09 -3.78 9.89 22.13 0.22 -3.56 16 23 C -0.22 -10.72 9.74 22.48 0.22 -10.50 16 24 H 0.28 17.05 6.97 -92.71 -0.65 16.41 16 25 H 0.08 4.76 6.86 -2.91 -0.02 4.74 16 26 H 0.10 5.15 6.24 -2.91 -0.02 5.13 16 27 H 0.42 10.20 8.80 -92.70 -0.82 9.38 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.14 1.42 8.09 -2.39 -0.02 1.40 16 30 H 0.36 4.35 9.08 -89.70 -0.81 3.53 16 31 H 0.36 3.61 8.78 -89.70 -0.79 2.83 16 32 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -72.27 287.36 0.63 -71.64 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -1.13 Total: 36.42 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 2.75 Total: -43.72 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.01 Total: -84.78 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.04 Total: -26.56 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.06 Total: 47.01 kcal Total: -72.27 0.63 -71.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051600742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.076 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds