Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27570 * 126.41646 * 2 1 4 4 N 1.39155 * 113.16542 * 180.02562 * 3 2 1 5 5 C 1.39100 * 124.43629 * 179.72866 * 4 3 2 6 6 N 1.32670 * 119.05356 * 180.02562 * 5 4 3 7 7 C 1.32333 * 121.22467 * 180.02562 * 6 5 4 8 8 C 1.38378 * 119.33688 * 0.02562 * 7 6 5 9 9 C 1.40917 * 118.28407 * 359.97438 * 8 7 6 10 10 C 1.41547 * 120.62575 * 179.97438 * 9 8 7 11 11 H 1.08010 * 119.99684 * 0.02562 * 10 9 8 12 12 C 1.40102 * 120.00282 * 180.02562 * 10 9 8 13 13 N 1.30667 * 119.99929 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00003 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47527 * 89.99290 * 14 12 10 16 16 H 1.48493 * 109.47100 * 209.99803 * 14 12 10 17 17 H 1.48508 * 109.46801 * 329.99462 * 14 12 10 18 18 N 1.31988 * 119.06379 * 359.75912 * 5 4 3 19 19 C 1.34954 * 111.12089 * 0.02562 * 4 3 2 20 20 O 1.21267 * 127.49959 * 179.97438 * 19 4 3 21 21 C 1.51440 * 126.41835 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.46843 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46753 * 119.97810 * 1 2 3 24 24 H 1.08992 * 109.47573 * 239.97711 * 1 2 3 25 25 H 1.08008 * 120.33024 * 179.97438 * 7 6 5 26 26 H 1.07995 * 120.86274 * 180.02562 * 8 7 6 27 27 H 0.96999 * 120.00171 * 179.97438 * 13 12 10 28 28 H 1.08998 * 110.60699 * 298.48954 * 21 2 1 29 29 H 1.09001 * 110.60639 * 61.29495 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 -0.0006 5 6 4.6474 1.6440 -0.0061 6 7 5.9046 1.2201 -0.0066 7 6 6.9162 2.0732 -0.0113 8 6 6.6568 3.4324 -0.0152 9 6 5.3127 3.8557 -0.0146 10 6 4.9908 5.2341 -0.0180 11 1 5.7788 5.9727 -0.0214 12 6 3.6499 5.6403 -0.0168 13 7 2.6965 4.7468 -0.0131 14 14 3.2252 7.4594 -0.0219 15 1 3.1101 7.9370 -1.4233 16 1 1.9332 7.6680 0.6798 17 1 4.2947 8.2194 0.6738 18 7 4.3449 2.9287 -0.0161 19 6 3.8036 -0.6292 -0.0016 20 8 4.8577 -1.2287 -0.0027 21 6 2.4061 -1.2186 -0.0005 22 1 -0.3633 1.0277 0.0005 23 1 -0.3633 -0.5135 -0.8902 24 1 -0.3634 -0.5141 0.8897 25 1 7.9342 1.7122 -0.0112 26 1 7.4635 4.1504 -0.0195 27 1 1.7682 5.0280 -0.0119 28 1 2.2422 -1.8167 0.8959 29 1 2.2395 -1.8179 -0.8957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074116255.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = 81.711220 kcal Electronic energy + Delta-G solvation = -17230.427418 eV Core-core repulsion = 14348.917376 eV Total energy + Delta-G solvation = -2881.510042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91830 -38.72335 -37.01799 -34.21936 -33.23377 -31.39306 -30.20743 -28.91598 -27.85382 -26.30490 -22.67706 -22.40144 -20.45795 -19.21771 -17.92431 -16.82366 -16.11332 -15.55208 -14.98835 -14.59749 -14.26879 -14.02322 -13.67462 -13.38373 -13.20350 -12.91027 -12.54119 -12.28794 -12.21740 -11.55930 -11.29843 -11.17807 -10.84851 -10.55801 -10.28137 -9.82542 -9.42143 -9.19856 -9.02462 -8.57129 -7.44454 -7.43213 -6.46208 -4.81407 1.99613 2.32559 2.75274 2.82759 3.03713 3.06623 3.14076 3.42156 3.86244 4.08218 4.30128 4.74081 5.03060 5.28963 5.48235 5.54614 5.60452 5.73274 5.81354 5.90804 6.27225 6.28228 6.60780 6.68537 6.99811 7.13870 7.21588 7.69230 7.92308 8.17387 8.29019 8.53626 8.70796 9.02634 10.02881 10.18995 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.008565 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.096966 B = 3268.294030 C = 4496.872540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.053 3.947 3 N -0.167 5.167 4 N -0.386 5.386 5 C 0.534 3.466 6 N -0.618 5.618 7 C 0.155 3.845 8 C -0.337 4.337 9 C 0.281 3.719 10 C -0.413 4.413 11 H 0.091 0.909 12 C 0.064 3.936 13 N -0.688 5.688 14 Si 0.911 3.089 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.260 1.260 18 N -0.506 5.506 19 C 0.497 3.503 20 O -0.461 6.461 21 C -0.169 4.169 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.112 0.888 27 H 0.277 0.723 28 H 0.129 0.871 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 -5.134 0.024 8.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.142 4.142 3 N 0.027 4.973 4 N -0.201 5.201 5 C 0.177 3.823 6 N -0.347 5.347 7 C -0.003 4.003 8 C -0.365 4.365 9 C 0.152 3.848 10 C -0.447 4.447 11 H 0.109 0.891 12 C -0.164 4.164 13 N -0.308 5.308 14 Si 0.734 3.266 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.230 5.230 19 C 0.282 3.718 20 O -0.328 6.328 21 C -0.212 4.212 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.153 0.847 26 H 0.130 0.870 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.104 -5.129 0.025 8.762 hybrid contribution 0.619 0.624 -0.010 0.879 sum -6.485 -4.505 0.015 7.896 Atomic orbital electron populations 1.20228 0.84867 1.04573 1.03037 1.25443 0.97612 0.90539 1.00566 1.75242 0.87466 1.25080 1.09544 1.46409 1.02122 1.04993 1.66544 1.18708 0.83200 0.86352 0.94002 1.67564 0.97959 1.39889 1.29293 1.22087 0.95905 0.89433 0.92861 1.22396 0.98466 0.96457 1.19156 1.18590 0.86109 0.92940 0.87194 1.19679 0.92876 0.90410 1.41755 0.89085 1.26173 0.96480 0.99862 0.93906 1.70129 1.00652 1.34632 1.25404 0.86271 0.78883 0.82086 0.79323 1.19296 1.19968 1.18433 1.68915 1.35264 0.96930 1.21907 1.21406 0.91217 0.82434 0.76756 1.90758 1.30871 1.65394 1.45797 1.22054 0.92997 0.99218 1.06910 0.89726 0.89946 0.89950 0.84656 0.86959 0.91156 0.85329 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.50 36.01 0.38 -0.27 15 2 C 0.05 0.79 7.59 -78.73 -0.60 0.19 15 3 N -0.17 -3.54 11.73 35.53 0.42 -3.13 15 4 N -0.39 -9.32 3.70 -12.70 -0.05 -9.36 15 5 C 0.53 14.79 8.39 -322.21 -2.70 12.08 15 6 N -0.62 -16.78 8.88 -13.87 -0.12 -16.90 15 7 C 0.16 3.80 11.29 -17.28 -0.20 3.60 15 8 C -0.34 -8.41 9.94 -38.52 -0.38 -8.80 15 9 C 0.28 7.82 6.58 -84.64 -0.56 7.26 15 10 C -0.41 -10.85 9.19 -37.62 -0.35 -11.20 15 11 H 0.09 2.19 7.85 -52.48 -0.41 1.78 15 12 C 0.06 1.60 5.50 -17.35 -0.10 1.50 15 13 N -0.69 -17.96 11.52 55.55 0.64 -17.32 15 14 Si 0.91 17.96 29.56 -169.99 -5.02 12.94 15 15 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 17 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 18 N -0.51 -14.59 7.76 -11.73 -0.09 -14.68 15 19 C 0.50 10.55 8.35 -10.42 -0.09 10.46 15 20 O -0.46 -11.07 16.72 5.57 0.09 -10.98 15 21 C -0.17 -2.36 6.93 -28.19 -0.20 -2.55 15 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 15 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.14 2.76 8.06 -52.48 -0.42 2.34 15 26 H 0.11 2.48 8.06 -52.49 -0.42 2.06 15 27 H 0.28 6.52 8.29 -40.82 -0.34 6.18 15 28 H 0.13 1.41 8.14 -51.93 -0.42 0.98 15 29 H 0.13 1.41 8.14 -51.93 -0.42 0.98 15 LS Contribution 268.41 15.07 4.04 4.04 Total: -1.00 -34.99 268.41 -7.38 -42.37 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -2.51 Total: 0.73 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -4.78 Total: 12.29 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.80 Total: -61.39 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.94 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.99 -7.38 -42.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116255.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.079 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds