Wall clock time and date at job start Mon Mar 30 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52999 * 109.46997 * 120.00212 * 2 1 3 5 5 C 1.52997 * 109.47317 * 60.00177 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 9 9 S 1.81396 * 109.47197 * 180.02562 * 7 6 5 10 10 O 1.42107 * 108.57716 * 174.48797 * 9 7 6 11 11 O 1.42098 * 108.57941 * 305.51255 * 9 7 6 12 12 C 1.81397 * 101.92114 * 60.00301 * 9 7 6 13 13 C 1.50703 * 109.46938 * 180.02562 * 12 9 7 14 14 H 1.08003 * 120.00085 * 359.97438 * 13 12 9 15 15 C 1.37881 * 119.99912 * 179.97438 * 13 12 9 16 16 N 1.31515 * 120.00063 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46790 * 60.00176 * 17 15 13 19 19 H 1.48503 * 109.46948 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47479 * 300.00212 * 17 15 13 21 21 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 22 22 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47261 * 299.99608 * 1 2 3 24 24 H 1.09001 * 109.47377 * 60.00149 * 1 2 3 25 25 H 1.08996 * 109.46929 * 299.99280 * 4 2 1 26 26 H 1.09002 * 109.46716 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 28 28 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 30 30 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46886 * 299.99553 * 12 9 7 32 32 H 1.08996 * 109.47578 * 59.99949 * 12 9 7 33 33 H 0.96995 * 120.00006 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47153 * 60.00231 * 21 7 6 35 35 H 1.09001 * 109.47289 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 -1.2493 8 1 0.4401 -2.1637 -1.2493 9 16 2.1342 -3.0193 -2.7304 10 8 1.5473 -2.4135 -3.8742 11 8 3.5491 -3.1217 -2.6487 12 6 1.4219 -4.6747 -2.5237 13 6 1.8266 -5.5444 -3.6860 14 1 2.4496 -5.1414 -4.4708 15 6 1.4015 -6.8546 -3.7475 16 7 0.6424 -7.3452 -2.7921 17 14 1.9025 -7.9324 -5.1886 18 1 3.3833 -8.0328 -5.2402 19 1 1.3206 -9.2880 -5.0187 20 1 1.4027 -7.3333 -6.4521 21 6 2.0400 -0.7213 -1.2493 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6768 -0.2074 2.1392 26 1 3.1300 -0.7209 1.2494 27 1 0.4401 -2.1638 1.2492 28 1 1.8938 -2.6777 2.1389 29 1 3.1301 -2.8849 -0.0001 30 1 1.6764 -3.9125 -0.0003 31 1 1.7885 -5.1147 -1.5962 32 1 0.3351 -4.6006 -2.4860 33 1 0.3437 -8.2670 -2.8352 34 1 3.1300 -0.7212 -1.2493 35 1 1.6763 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787672.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:17 Heat of formation + Delta-G solvation = -106.127547 kcal Electronic energy + Delta-G solvation = -16843.760360 eV Core-core repulsion = 14160.796562 eV Total energy + Delta-G solvation = -2682.963799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94950 -35.97381 -35.01900 -33.34412 -32.05714 -30.91890 -29.03010 -26.78544 -23.74690 -22.63491 -22.17225 -18.66506 -17.99227 -17.06553 -16.13037 -15.48367 -15.15117 -14.65338 -14.48099 -14.17447 -13.84072 -13.76518 -12.90756 -12.52064 -12.44676 -12.11867 -11.89851 -11.56316 -11.36241 -11.19197 -11.12487 -11.06476 -10.99584 -10.97191 -10.84953 -10.58590 -10.23633 -10.04384 -9.82297 -9.57151 -8.92523 -8.67459 -6.30531 -4.39489 1.01747 3.26198 3.27925 3.33418 3.86174 4.24507 4.44335 4.54730 4.74655 4.84554 4.92212 5.06720 5.23356 5.26476 5.38210 5.40333 5.52376 5.58552 5.67749 5.79318 5.82509 5.96514 6.03212 6.06671 6.16292 6.20289 6.30339 6.31467 6.49972 6.70695 6.75370 7.50842 7.78633 8.62199 9.27126 10.81334 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039720 B = 0.006597 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.774140 B = 4243.527337 C = 4504.261569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.107 4.107 7 C -0.585 4.585 8 H 0.131 0.869 9 S 2.391 3.609 10 O -0.962 6.962 11 O -0.958 6.958 12 C -0.403 4.403 13 C -0.529 4.529 14 H 0.070 0.930 15 C 0.075 3.925 16 N -0.882 5.882 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.270 1.270 21 C -0.099 4.099 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.268 0.732 34 H 0.075 0.925 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 10.768 8.645 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.145 4.145 7 C -0.691 4.691 8 H 0.149 0.851 9 S 2.578 3.422 10 O -0.959 6.959 11 O -0.955 6.955 12 C -0.538 4.538 13 C -0.568 4.568 14 H 0.088 0.912 15 C -0.131 4.131 16 N -0.518 5.518 17 Si 0.730 3.270 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.138 4.138 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.042 11.007 8.035 13.628 hybrid contribution -0.431 -0.852 -0.015 0.954 sum -0.389 10.156 8.021 12.947 Atomic orbital electron populations 1.21972 0.95306 1.02444 1.01375 1.21000 0.96034 0.98664 0.94523 0.91119 1.21581 1.00711 0.95892 0.97119 1.21496 1.01103 0.95306 0.97264 1.21396 1.01829 0.99113 0.92167 1.30349 1.11721 1.07758 1.19270 0.85124 1.08961 0.76713 0.80295 0.76229 1.93463 1.79485 1.77300 1.45648 1.93453 1.28532 1.86980 1.86546 1.27500 1.07651 1.12091 1.06526 1.20334 1.34354 0.96467 1.05638 0.91201 1.24922 0.94040 0.97502 0.96617 1.69936 1.33619 1.15727 1.32567 0.86435 0.79443 0.78996 0.82109 1.19442 1.20755 1.19455 1.21343 1.01189 0.91992 0.99237 0.91729 0.92934 0.92657 0.92163 0.91847 0.91483 0.91748 0.90199 0.89898 0.89552 0.89881 0.92225 0.90625 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.50 37.16 0.32 -1.33 16 2 C -0.08 -0.93 3.20 -90.61 -0.29 -1.22 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -1.23 5.45 -26.73 -0.15 -1.38 16 5 C -0.11 -1.31 5.65 -26.73 -0.15 -1.46 16 6 C -0.11 -1.52 4.95 -26.73 -0.13 -1.65 16 7 C -0.59 -9.02 2.30 -26.73 -0.06 -9.08 16 8 H 0.13 1.81 6.43 -51.92 -0.33 1.48 16 9 S 2.39 50.09 4.16 -107.50 -0.45 49.64 16 10 O -0.96 -22.88 18.10 -57.83 -1.05 -23.93 16 11 O -0.96 -22.43 17.91 -57.83 -1.04 -23.47 16 12 C -0.40 -9.61 5.11 36.01 0.18 -9.43 16 13 C -0.53 -14.79 9.13 -34.44 -0.31 -15.11 16 14 H 0.07 1.95 7.71 -52.48 -0.40 1.55 16 15 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 16 N -0.88 -24.88 13.29 55.43 0.74 -24.15 16 17 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.10 -1.38 4.74 -26.73 -0.13 -1.51 16 22 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 30 H 0.08 1.19 6.55 -51.93 -0.34 0.85 16 31 H 0.09 1.99 6.87 -51.92 -0.36 1.64 16 32 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 287.25 15.07 4.33 4.33 Total: -1.00 -32.79 287.25 -8.68 -41.47 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.38 Total: 0.11 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: -0.82 Total: -40.18 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.74 Total: -24.15 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -2.08 Total: -47.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 50.09 SS G_CDS: -0.45 Total: 49.64 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.79 -8.68 -41.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787672.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.657 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds