Wall clock time and date at job start Mon Mar 30 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52999 * 109.46997 * 120.00212 * 2 1 3 5 5 C 1.52997 * 109.47317 * 60.00177 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 9 9 S 1.81396 * 109.47197 * 180.02562 * 7 6 5 10 10 O 1.42107 * 108.57716 * 174.48797 * 9 7 6 11 11 O 1.42098 * 108.57941 * 305.51255 * 9 7 6 12 12 C 1.81397 * 101.92114 * 60.00301 * 9 7 6 13 13 C 1.50703 * 109.46938 * 180.02562 * 12 9 7 14 14 H 1.08003 * 120.00085 * 359.97438 * 13 12 9 15 15 C 1.37881 * 119.99912 * 179.97438 * 13 12 9 16 16 N 1.31515 * 120.00063 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46790 * 60.00176 * 17 15 13 19 19 H 1.48503 * 109.46948 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47479 * 300.00212 * 17 15 13 21 21 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 22 22 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47261 * 299.99608 * 1 2 3 24 24 H 1.09001 * 109.47377 * 60.00149 * 1 2 3 25 25 H 1.08996 * 109.46929 * 299.99280 * 4 2 1 26 26 H 1.09002 * 109.46716 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 28 28 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 30 30 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46886 * 299.99553 * 12 9 7 32 32 H 1.08996 * 109.47578 * 59.99949 * 12 9 7 33 33 H 0.96995 * 120.00006 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47153 * 60.00231 * 21 7 6 35 35 H 1.09001 * 109.47289 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 -1.2493 8 1 0.4401 -2.1637 -1.2493 9 16 2.1342 -3.0193 -2.7304 10 8 1.5473 -2.4135 -3.8742 11 8 3.5491 -3.1217 -2.6487 12 6 1.4219 -4.6747 -2.5237 13 6 1.8266 -5.5444 -3.6860 14 1 2.4496 -5.1414 -4.4708 15 6 1.4015 -6.8546 -3.7475 16 7 0.6424 -7.3452 -2.7921 17 14 1.9025 -7.9324 -5.1886 18 1 3.3833 -8.0328 -5.2402 19 1 1.3206 -9.2880 -5.0187 20 1 1.4027 -7.3333 -6.4521 21 6 2.0400 -0.7213 -1.2493 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6768 -0.2074 2.1392 26 1 3.1300 -0.7209 1.2494 27 1 0.4401 -2.1638 1.2492 28 1 1.8938 -2.6777 2.1389 29 1 3.1301 -2.8849 -0.0001 30 1 1.6764 -3.9125 -0.0003 31 1 1.7885 -5.1147 -1.5962 32 1 0.3351 -4.6006 -2.4860 33 1 0.3437 -8.2670 -2.8352 34 1 3.1300 -0.7212 -1.2493 35 1 1.6763 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787672.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:16 Heat of formation + Delta-G solvation = -128.501834 kcal Electronic energy + Delta-G solvation = -16844.730582 eV Core-core repulsion = 14160.796562 eV Total energy + Delta-G solvation = -2683.934021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97111 -37.78255 -36.83188 -35.40634 -33.12451 -31.96823 -30.99199 -27.70345 -25.63214 -23.90268 -23.20765 -19.75173 -19.56453 -18.98224 -17.73913 -17.18484 -16.80236 -16.12966 -15.91347 -15.45885 -14.98166 -14.81235 -14.39197 -14.03268 -13.91357 -13.51811 -13.40081 -12.96483 -12.94195 -12.86340 -12.73910 -12.56553 -12.45626 -12.22342 -12.03807 -11.97597 -11.77235 -11.27681 -11.13936 -10.96421 -10.76549 -10.50759 -8.40746 -6.56884 -0.66673 1.36246 1.39335 1.47603 2.18142 2.30536 2.91066 2.92401 3.20915 3.51795 3.67236 3.90952 4.13890 4.20649 4.30959 4.42091 4.43326 4.57747 4.76038 4.77626 4.79695 4.89743 4.91983 5.01977 5.06121 5.12909 5.23098 5.35554 5.35937 5.38206 5.42744 5.62592 5.76050 6.52314 7.13116 8.71472 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039720 B = 0.006597 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.774140 B = 4243.527337 C = 4504.261569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.078 4.078 3 H 0.090 0.910 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.546 4.546 8 H 0.153 0.847 9 S 2.398 3.602 10 O -0.997 6.997 11 O -0.989 6.989 12 C -0.421 4.421 13 C -0.565 4.565 14 H 0.056 0.944 15 C 0.026 3.974 16 N -0.907 5.907 17 Si 0.959 3.041 18 H -0.265 1.265 19 H -0.266 1.266 20 H -0.265 1.265 21 C -0.110 4.110 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.274 0.726 34 H 0.074 0.926 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 11.912 10.190 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.098 4.098 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.658 4.658 8 H 0.171 0.829 9 S 2.590 3.410 10 O -0.994 6.994 11 O -0.987 6.987 12 C -0.554 4.554 13 C -0.604 4.604 14 H 0.074 0.926 15 C -0.177 4.177 16 N -0.544 5.544 17 Si 0.782 3.218 18 H -0.190 1.190 19 H -0.190 1.190 20 H -0.190 1.190 21 C -0.148 4.148 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.366 12.092 9.521 15.395 hybrid contribution -0.311 -1.115 -0.402 1.226 sum -0.677 10.977 9.119 14.286 Atomic orbital electron populations 1.22017 0.94698 1.02360 1.02415 1.21036 0.96511 0.99297 0.92940 0.89152 1.21626 1.00863 0.95161 0.97698 1.21531 1.01697 0.95808 0.95868 1.21552 1.01772 0.99205 0.92858 1.29974 1.12756 1.07979 1.15074 0.82930 1.08417 0.75749 0.79069 0.77784 1.93406 1.79724 1.76999 1.49271 1.93401 1.30361 1.87180 1.87729 1.27564 1.07716 1.14919 1.05162 1.20735 1.34803 0.97954 1.06880 0.92579 1.25778 0.93933 0.98746 0.99242 1.69997 1.34144 1.16307 1.33911 0.85581 0.79369 0.77862 0.79000 1.18953 1.19022 1.19013 1.21557 1.01366 0.90651 1.01265 0.92341 0.90942 0.92745 0.89726 0.91798 0.90549 0.90192 0.90611 0.90461 0.89471 0.90099 0.91719 0.90756 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.50 71.98 0.61 -2.17 16 2 C -0.08 -1.48 3.20 -10.79 -0.03 -1.52 16 3 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.12 -2.01 5.45 30.59 0.17 -1.84 16 5 C -0.11 -2.19 5.65 30.59 0.17 -2.02 16 6 C -0.12 -3.10 4.95 30.60 0.15 -2.95 16 7 C -0.55 -16.16 2.30 30.59 0.07 -16.09 16 8 H 0.15 3.94 6.43 -2.39 -0.02 3.93 16 9 S 2.40 102.84 4.16 -56.49 -0.24 102.61 16 10 O -1.00 -48.70 18.10 -127.37 -2.31 -51.01 16 11 O -0.99 -47.68 17.91 -127.37 -2.28 -49.97 16 12 C -0.42 -20.80 5.11 71.24 0.36 -20.43 16 13 C -0.57 -32.72 9.13 25.60 0.23 -32.49 16 14 H 0.06 3.28 7.71 -2.91 -0.02 3.26 16 15 C 0.03 1.46 5.46 84.66 0.46 1.93 16 16 N -0.91 -51.82 13.29 21.45 0.28 -51.53 16 17 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C -0.11 -2.83 4.74 30.60 0.15 -2.69 16 22 H 0.06 1.09 4.81 -2.39 -0.01 1.08 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.40 6.43 -2.39 -0.02 1.38 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 30 H 0.08 2.17 6.55 -2.39 -0.02 2.15 16 31 H 0.09 4.18 6.87 -2.39 -0.02 4.17 16 32 H 0.08 3.92 8.14 -2.39 -0.02 3.90 16 33 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.61 287.25 0.89 -70.72 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.06 Total: 13.69 kcal Atomic # 6 Polarization: -82.61 SS G_CDS: 2.34 Total: -80.27 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.28 Total: -51.53 kcal Atomic # 8 Polarization: -96.39 SS G_CDS: -4.59 Total: -100.97 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 102.84 SS G_CDS: -0.24 Total: 102.61 kcal Total: -71.61 0.89 -70.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787672.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.783 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds