Wall clock time and date at job start Mon Mar 30 2020 03:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00302 * 3 2 1 5 5 H 1.48497 * 109.46809 * 30.00047 * 3 2 1 6 6 H 1.48493 * 109.47169 * 150.00468 * 3 2 1 7 7 C 1.37878 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47273 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47032 * 180.02562 * 10 9 7 12 12 O 1.42103 * 108.58148 * 65.51093 * 11 10 9 13 13 O 1.42098 * 108.57976 * 294.48361 * 11 10 9 14 14 C 1.81406 * 101.92199 * 179.97438 * 11 10 9 15 15 C 1.52994 * 109.47142 * 180.02562 * 14 11 10 16 16 C 1.54961 * 110.92578 * 71.54091 * 15 14 11 17 17 C 1.54270 * 104.16191 * 156.29427 * 16 15 14 18 18 C 1.53869 * 106.63967 * 336.44607 * 17 16 15 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 H 0.97003 * 120.00254 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46941 * 60.00481 * 9 7 2 22 22 H 1.08996 * 109.47185 * 300.00169 * 9 7 2 23 23 H 1.08993 * 109.47563 * 59.99810 * 10 9 7 24 24 H 1.09005 * 109.46694 * 299.99609 * 10 9 7 25 25 H 1.08995 * 109.46902 * 59.99823 * 14 11 10 26 26 H 1.09000 * 109.47145 * 299.99830 * 14 11 10 27 27 H 1.09001 * 110.67554 * 308.23175 * 15 14 11 28 28 H 1.08997 * 110.47708 * 37.64024 * 16 15 14 29 29 H 1.09002 * 110.53308 * 274.97416 * 16 15 14 30 30 H 1.09002 * 110.03399 * 217.13605 * 17 16 15 31 31 H 1.08995 * 110.02943 * 95.75505 * 17 16 15 32 32 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 33 33 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 34 34 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 35 35 H 1.09000 * 110.48806 * 264.79985 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2330 -0.0013 12 8 0.6286 -5.3456 -1.2274 13 8 0.6279 -5.3463 1.2242 14 6 2.6879 -6.4451 -0.0020 15 6 2.1035 -7.8590 -0.0033 16 6 1.4690 -8.1943 -1.3767 17 6 1.4961 -9.7356 -1.4388 18 6 2.6133 -10.1953 -0.4859 19 6 3.2274 -8.9175 0.1223 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8719 -3.6044 0.8894 24 1 2.8718 -3.6044 -0.8906 25 1 3.3015 -6.3060 0.8880 26 1 3.3014 -6.3051 -0.8919 27 1 1.3731 -7.9744 0.7975 28 1 2.0635 -7.7695 -2.1854 29 1 0.4432 -7.8287 -1.4234 30 1 1.7132 -10.0646 -2.4551 31 1 0.5376 -10.1392 -1.1128 32 1 2.1968 -10.8215 0.3031 33 1 3.3722 -10.7482 -1.0395 34 1 3.4843 -9.0788 1.1692 35 1 4.1077 -8.6111 -0.4427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:52 Heat of formation + Delta-G solvation = -104.134157 kcal Electronic energy + Delta-G solvation = -16116.058309 eV Core-core repulsion = 13433.180950 eV Total energy + Delta-G solvation = -2682.877359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.42015 -36.40072 -35.44894 -33.85448 -31.72231 -31.14943 -28.81404 -26.08278 -25.16405 -21.56397 -20.46006 -20.17247 -18.34276 -16.99191 -16.31621 -15.64652 -15.55162 -15.32376 -14.69265 -14.48917 -13.93218 -13.43636 -13.35893 -12.59795 -12.50554 -11.92035 -11.71363 -11.58267 -11.43909 -11.42981 -11.16263 -11.06695 -11.01872 -10.89557 -10.76354 -10.54430 -10.39801 -10.33737 -10.13824 -9.61871 -9.08824 -8.47837 -6.09943 -4.15673 0.49984 3.27281 3.32438 3.33911 3.36102 4.04072 4.28238 4.36829 4.41871 4.52276 4.60474 5.00492 5.09508 5.24643 5.25141 5.35125 5.42417 5.49225 5.52544 5.67628 5.68934 5.73238 5.76044 5.82953 5.93490 6.13118 6.20447 6.25459 6.52009 7.36958 7.42911 7.82842 8.20209 8.87933 9.48771 11.01027 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.059758 B = 0.004656 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.441446 B = 6012.180160 C = 6148.902957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.575 4.575 11 S 2.399 3.601 12 O -0.943 6.943 13 O -0.948 6.948 14 C -0.616 4.616 15 C -0.083 4.083 16 C -0.136 4.136 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.112 4.112 20 H 0.265 0.735 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.106 -17.232 -1.010 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.708 4.708 11 S 2.584 3.416 12 O -0.940 6.940 13 O -0.945 6.945 14 C -0.743 4.743 15 C -0.102 4.102 16 C -0.174 4.174 17 C -0.162 4.162 18 C -0.164 4.164 19 C -0.151 4.151 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.029 -17.326 -1.009 18.373 hybrid contribution 1.439 1.075 0.018 1.796 sum 7.468 -16.252 -0.991 17.913 Atomic orbital electron populations 1.69960 1.06111 1.27146 1.49559 1.25066 0.94964 0.99497 0.94940 0.86475 0.79705 0.82909 0.78220 1.20472 1.21002 1.19777 1.21032 0.93049 0.89862 1.52186 0.92089 1.18975 0.92714 0.90196 0.99140 1.30224 1.13384 1.17337 1.09822 1.08666 0.78621 0.78905 0.75432 1.93536 1.69194 1.85837 1.45404 1.93535 1.69278 1.85970 1.45713 1.30463 1.20211 1.12581 1.11018 1.21856 0.98081 0.91093 0.99192 1.22710 1.02434 0.95918 0.96310 1.22126 0.98858 0.95593 0.99634 1.22152 0.98003 0.97454 0.98797 1.22389 0.97531 0.94128 1.01035 0.92549 0.94636 0.94699 0.86341 0.86294 0.85286 0.85272 0.89233 0.90609 0.90041 0.91672 0.91675 0.91790 0.91825 0.91407 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.58 -10.81 5.74 37.16 0.21 -10.59 16 11 S 2.40 41.07 4.65 -107.50 -0.50 40.57 16 12 O -0.94 -18.72 16.60 -57.83 -0.96 -19.68 16 13 O -0.95 -19.46 18.10 -57.83 -1.05 -20.50 16 14 C -0.62 -7.20 5.30 37.15 0.20 -7.00 16 15 C -0.08 -0.97 2.86 -88.59 -0.25 -1.23 16 16 C -0.14 -1.63 5.37 -25.03 -0.13 -1.76 16 17 C -0.12 -1.20 6.80 -25.61 -0.17 -1.37 16 18 C -0.13 -1.09 6.80 -25.62 -0.17 -1.27 16 19 C -0.11 -1.06 6.27 -25.07 -0.16 -1.21 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 24 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 25 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.13 1.23 8.00 -51.92 -0.42 0.81 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.08 0.87 7.95 -51.93 -0.41 0.45 16 29 H 0.08 1.09 7.47 -51.93 -0.39 0.70 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -34.39 299.27 -9.14 -43.53 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.83 Total: -1.54 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: -1.03 Total: -37.15 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -2.01 Total: -40.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 41.07 SS G_CDS: -0.50 Total: 40.57 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.39 -9.14 -43.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.606 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds