Wall clock time and date at job start Mon Mar 30 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00302 * 3 2 1 5 5 H 1.48497 * 109.46809 * 30.00047 * 3 2 1 6 6 H 1.48493 * 109.47169 * 150.00468 * 3 2 1 7 7 C 1.37878 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47273 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47032 * 180.02562 * 10 9 7 12 12 O 1.42103 * 108.58148 * 65.51093 * 11 10 9 13 13 O 1.42098 * 108.57976 * 294.48361 * 11 10 9 14 14 C 1.81406 * 101.92199 * 179.97438 * 11 10 9 15 15 C 1.52994 * 109.47142 * 180.02562 * 14 11 10 16 16 C 1.54961 * 110.92578 * 71.54091 * 15 14 11 17 17 C 1.54270 * 104.16191 * 156.29427 * 16 15 14 18 18 C 1.53869 * 106.63967 * 336.44607 * 17 16 15 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 H 0.97003 * 120.00254 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46941 * 60.00481 * 9 7 2 22 22 H 1.08996 * 109.47185 * 300.00169 * 9 7 2 23 23 H 1.08993 * 109.47563 * 59.99810 * 10 9 7 24 24 H 1.09005 * 109.46694 * 299.99609 * 10 9 7 25 25 H 1.08995 * 109.46902 * 59.99823 * 14 11 10 26 26 H 1.09000 * 109.47145 * 299.99830 * 14 11 10 27 27 H 1.09001 * 110.67554 * 308.23175 * 15 14 11 28 28 H 1.08997 * 110.47708 * 37.64024 * 16 15 14 29 29 H 1.09002 * 110.53308 * 274.97416 * 16 15 14 30 30 H 1.09002 * 110.03399 * 217.13605 * 17 16 15 31 31 H 1.08995 * 110.02943 * 95.75505 * 17 16 15 32 32 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 33 33 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 34 34 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 35 35 H 1.09000 * 110.48806 * 264.79985 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2330 -0.0013 12 8 0.6286 -5.3456 -1.2274 13 8 0.6279 -5.3463 1.2242 14 6 2.6879 -6.4451 -0.0020 15 6 2.1035 -7.8590 -0.0033 16 6 1.4690 -8.1943 -1.3767 17 6 1.4961 -9.7356 -1.4388 18 6 2.6133 -10.1953 -0.4859 19 6 3.2274 -8.9175 0.1223 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8719 -3.6044 0.8894 24 1 2.8718 -3.6044 -0.8906 25 1 3.3015 -6.3060 0.8880 26 1 3.3014 -6.3051 -0.8919 27 1 1.3731 -7.9744 0.7975 28 1 2.0635 -7.7695 -2.1854 29 1 0.4432 -7.8287 -1.4234 30 1 1.7132 -10.0646 -2.4551 31 1 0.5376 -10.1392 -1.1128 32 1 2.1968 -10.8215 0.3031 33 1 3.3722 -10.7482 -1.0395 34 1 3.4843 -9.0788 1.1692 35 1 4.1077 -8.6111 -0.4427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:51 Heat of formation + Delta-G solvation = -128.180871 kcal Electronic energy + Delta-G solvation = -16117.101052 eV Core-core repulsion = 13433.180950 eV Total energy + Delta-G solvation = -2683.920103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23164 -37.89476 -36.93522 -35.86113 -33.11277 -32.60820 -29.57334 -27.75152 -26.43427 -23.42767 -21.21142 -21.06922 -19.76168 -18.82728 -17.61468 -17.07540 -16.90657 -16.54299 -16.30026 -15.66971 -15.19363 -14.73037 -14.45245 -14.19672 -13.71528 -13.46804 -13.08570 -12.96584 -12.90590 -12.78902 -12.73726 -12.23313 -12.19944 -12.07557 -11.93581 -11.91133 -11.72801 -11.58355 -11.34608 -11.22299 -10.76560 -10.64740 -8.25692 -6.40565 -0.85815 1.40384 1.42944 1.54060 2.00308 2.38021 2.78809 3.07399 3.16040 3.48102 3.57129 3.75928 4.09191 4.09715 4.23861 4.26427 4.44101 4.58330 4.64884 4.67769 4.80070 4.82832 4.85686 5.00827 5.12885 5.22754 5.30558 5.31216 5.33090 5.41359 5.51540 5.69078 6.06502 6.74342 7.29893 8.86843 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.059758 B = 0.004656 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.441446 B = 6012.180160 C = 6148.902957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.019 3.981 10 C -0.581 4.581 11 S 2.395 3.605 12 O -0.982 6.982 13 O -0.993 6.993 14 C -0.575 4.575 15 C -0.097 4.097 16 C -0.147 4.147 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.106 4.106 20 H 0.267 0.733 21 H 0.002 0.998 22 H 0.000 1.000 23 H 0.144 0.856 24 H 0.146 0.854 25 H 0.166 0.834 26 H 0.165 0.835 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.636 -18.443 -1.027 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.097 0.903 9 C -0.019 4.019 10 C -0.711 4.711 11 S 2.586 3.414 12 O -0.979 6.979 13 O -0.991 6.991 14 C -0.707 4.707 15 C -0.116 4.116 16 C -0.185 4.185 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.145 4.145 20 H 0.075 0.925 21 H 0.020 0.980 22 H 0.019 0.981 23 H 0.162 0.838 24 H 0.164 0.836 25 H 0.184 0.816 26 H 0.183 0.817 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.526 -18.481 -1.026 20.817 hybrid contribution 0.336 1.315 0.006 1.358 sum 9.862 -17.165 -1.020 19.823 Atomic orbital electron populations 1.70126 1.08251 1.28295 1.50981 1.26182 0.95856 1.04094 0.94359 0.85272 0.78645 0.77409 0.78672 1.19523 1.20910 1.17912 1.21592 0.94102 0.90869 1.51447 0.90332 1.18806 0.93749 0.93355 0.95979 1.30143 1.12368 1.16183 1.12445 1.08404 0.79946 0.79301 0.73792 1.93484 1.71650 1.86336 1.46416 1.93474 1.71904 1.86586 1.47091 1.30133 1.16767 1.09084 1.14757 1.22036 0.99253 0.91636 0.98693 1.22794 1.01026 0.97801 0.96880 1.22150 0.99532 0.93809 1.00806 1.22174 0.97879 0.97443 0.98789 1.22415 0.96758 0.92997 1.02327 0.92451 0.97958 0.98138 0.83751 0.83589 0.81564 0.81701 0.90249 0.90021 0.92829 0.90607 0.91941 0.91249 0.90131 0.90079 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.47 13.29 21.45 0.28 -58.18 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 3 Si 0.98 43.71 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.02 1.04 4.98 29.85 0.15 1.19 16 10 C -0.58 -21.54 5.74 71.98 0.41 -21.12 16 11 S 2.40 82.32 4.65 -56.49 -0.26 82.06 16 12 O -0.98 -40.51 16.60 -127.37 -2.11 -42.62 16 13 O -0.99 -42.24 18.10 -127.37 -2.31 -44.55 16 14 C -0.57 -11.32 5.30 71.98 0.38 -10.94 16 15 C -0.10 -2.01 2.86 -9.48 -0.03 -2.03 16 16 C -0.15 -3.33 5.37 31.70 0.17 -3.16 16 17 C -0.13 -2.17 6.80 31.32 0.21 -1.95 16 18 C -0.13 -1.72 6.80 31.32 0.21 -1.50 16 19 C -0.11 -1.52 6.27 31.67 0.20 -1.32 16 20 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 21 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 22 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 23 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 24 H 0.15 4.51 8.14 -2.39 -0.02 4.49 16 25 H 0.17 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.17 2.25 8.00 -2.39 -0.02 2.23 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.71 7.95 -2.39 -0.02 1.69 16 29 H 0.05 1.48 7.47 -2.39 -0.02 1.47 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.00 8.05 -2.39 -0.02 0.98 16 Total: -1.00 -79.29 299.27 1.07 -78.21 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.04 Total: 10.42 kcal Atomic # 6 Polarization: -73.47 SS G_CDS: 2.41 Total: -71.07 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.28 Total: -58.18 kcal Atomic # 8 Polarization: -82.75 SS G_CDS: -4.42 Total: -87.17 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 82.32 SS G_CDS: -0.26 Total: 82.06 kcal Total: -79.29 1.07 -78.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.967 kcal (2) G-P(sol) polarization free energy of solvation -79.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds