Wall clock time and date at job start Mon Mar 30 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46643 * 2 1 4 4 H 1.09003 * 109.46960 * 54.61015 * 3 2 1 5 5 C 1.50702 * 109.46863 * 174.60564 * 3 2 1 6 6 H 1.08002 * 119.99730 * 119.72451 * 5 3 2 7 7 C 1.37878 * 120.00231 * 299.99985 * 5 3 2 8 8 N 1.31513 * 120.00083 * 359.72637 * 7 5 3 9 9 Si 1.86803 * 119.99844 * 179.72151 * 7 5 3 10 10 H 1.48500 * 109.46830 * 60.00499 * 9 7 5 11 11 H 1.48504 * 109.46677 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47215 * 300.00346 * 9 7 5 13 13 S 1.81393 * 109.47257 * 294.60931 * 3 2 1 14 14 O 1.42095 * 109.47461 * 67.36652 * 13 3 2 15 15 C 1.81403 * 103.00046 * 183.75439 * 13 3 2 16 16 C 1.53177 * 109.54277 * 303.85062 * 15 13 3 17 17 C 1.53091 * 109.16326 * 183.15235 * 16 15 13 18 18 O 1.42902 * 109.41622 * 57.60520 * 17 16 15 19 19 C 1.42897 * 114.09788 * 298.84490 * 18 17 16 20 20 C 1.53089 * 109.41709 * 61.15625 * 19 18 17 21 21 H 1.08996 * 109.47318 * 306.46034 * 1 2 3 22 22 H 1.09002 * 109.47529 * 66.46673 * 1 2 3 23 23 H 1.09002 * 109.46973 * 186.46042 * 1 2 3 24 24 H 1.08993 * 109.47081 * 240.00132 * 2 1 3 25 25 H 1.09002 * 109.46738 * 119.99916 * 2 1 3 26 26 H 0.96998 * 120.00093 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.54109 * 64.11270 * 15 13 3 28 28 H 1.09003 * 109.52465 * 303.05478 * 16 15 13 29 29 H 1.09002 * 109.52639 * 63.24428 * 16 15 13 30 30 H 1.09003 * 109.48279 * 297.62559 * 17 16 15 31 31 H 1.08998 * 109.48301 * 177.59217 * 17 16 15 32 32 H 1.09001 * 109.48139 * 301.16900 * 19 18 17 33 33 H 1.09010 * 109.49002 * 181.14887 * 19 18 17 34 34 H 1.08999 * 109.52380 * 182.48533 * 20 19 18 35 35 H 1.08999 * 109.51961 * 62.29930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5998 1.9834 0.8378 5 6 3.5410 1.4447 0.1336 6 1 4.1515 1.8835 -0.6418 7 6 4.1353 0.8813 1.2429 8 7 3.3919 0.3469 2.1870 9 14 5.9963 0.8771 1.4046 10 1 6.4965 2.2753 1.4008 11 1 6.3809 0.2167 2.6779 12 1 6.5906 0.1356 0.2637 13 16 1.5700 2.2500 -1.5548 14 8 0.1579 2.4011 -1.6022 15 6 2.3484 3.8828 -1.4183 16 6 1.8713 4.5723 -0.1364 17 6 2.4712 5.9792 -0.0694 18 8 2.0911 6.7138 -1.2347 19 6 2.5505 6.1415 -2.4608 20 6 1.9538 4.7411 -2.6240 21 1 -0.3634 0.6107 0.8265 22 1 -0.3634 0.4103 -0.9422 23 1 -0.3633 -1.0212 0.1156 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8100 -0.0497 2.9672 27 1 3.4322 3.7688 -1.3909 28 1 0.7834 4.6402 -0.1426 29 1 2.1963 3.9961 0.7299 30 1 3.5580 5.9091 -0.0224 31 1 2.1011 6.4903 0.8193 32 1 3.6383 6.0735 -2.4452 33 1 2.2376 6.7695 -3.2951 34 1 2.3377 4.2856 -3.5367 35 1 0.8676 4.8124 -2.6804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:04 Heat of formation + Delta-G solvation = -104.687697 kcal Electronic energy + Delta-G solvation = -16985.564047 eV Core-core repulsion = 14302.662685 eV Total energy + Delta-G solvation = -2682.901362 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.82199 -34.78579 -34.57865 -33.29353 -31.60127 -30.82822 -27.57198 -24.74917 -23.51701 -23.09410 -20.46053 -19.88456 -16.95666 -16.49916 -15.82807 -15.74366 -15.31808 -14.52818 -14.47079 -13.86344 -13.54945 -13.28942 -12.99968 -12.46031 -11.99281 -11.87793 -11.77438 -11.44474 -11.14772 -11.03430 -10.88500 -10.76203 -10.47333 -10.42910 -10.17776 -10.07133 -9.84233 -9.51606 -9.22707 -8.62353 -8.32139 -7.07759 -6.16262 -4.30267 2.60417 3.20431 3.26596 3.27480 3.72292 4.12759 4.27642 4.78565 5.02443 5.12336 5.22754 5.29809 5.51710 5.53966 5.74393 5.78766 5.89941 6.06442 6.15893 6.17255 6.28850 6.32728 6.46852 6.48556 6.64708 6.85397 7.02778 7.04728 7.40270 7.43293 7.63216 7.75440 8.10328 8.71812 9.35685 10.88062 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.009957 C = 0.007494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.646931 B = 2811.285843 C = 3735.189879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.210 4.210 4 H 0.048 0.952 5 C -0.510 4.510 6 H 0.068 0.932 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.272 1.272 13 S 1.178 4.822 14 O -0.879 6.879 15 C -0.394 4.394 16 C -0.144 4.144 17 C 0.067 3.933 18 O -0.390 6.390 19 C 0.067 3.933 20 C -0.132 4.132 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.103 0.897 26 H 0.264 0.736 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 4.921 -7.403 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.140 4.140 3 C -0.332 4.332 4 H 0.066 0.934 5 C -0.549 4.549 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.197 1.197 13 S 1.383 4.617 14 O -0.874 6.874 15 C -0.510 4.510 16 C -0.182 4.182 17 C -0.011 4.011 18 O -0.309 6.309 19 C -0.011 4.011 20 C -0.170 4.170 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.342 4.656 -7.998 9.352 hybrid contribution 0.478 0.737 2.185 2.355 sum 1.820 5.393 -5.813 8.136 Atomic orbital electron populations 1.22098 0.98704 0.99674 1.01865 1.21310 0.91854 0.97357 1.03432 1.24639 1.01951 0.99733 1.06828 0.93412 1.20505 0.88356 1.39921 1.06104 0.91346 1.24951 0.98163 0.94633 0.95472 1.69873 1.35227 1.37390 1.09098 0.86635 0.85195 0.78462 0.77669 1.20114 1.21300 1.19742 1.69608 0.91607 0.91358 1.09080 1.92952 1.27176 1.82696 1.84601 1.27409 1.10124 1.15517 0.97937 1.22148 1.00874 0.96887 0.98316 1.22540 0.98669 0.92242 0.87631 1.87855 1.77985 1.50627 1.14435 1.22506 0.97831 0.93993 0.86797 1.21865 1.01955 0.95826 0.97370 0.93886 0.92374 0.94425 0.93816 0.87868 0.92635 0.86065 0.91790 0.89116 0.93013 0.89526 0.93194 0.89412 0.90352 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 9.36 37.16 0.35 -3.23 16 2 C -0.10 -2.26 5.24 -26.73 -0.14 -2.40 16 3 C -0.21 -4.79 1.60 -27.88 -0.04 -4.83 16 4 H 0.05 1.24 7.22 -51.92 -0.37 0.87 16 5 C -0.51 -11.97 8.07 -34.44 -0.28 -12.24 16 6 H 0.07 1.46 6.86 -52.49 -0.36 1.10 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.35 11.31 55.43 0.63 -22.72 16 9 Si 0.89 19.20 29.54 -169.99 -5.02 14.18 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 13 S 1.18 22.56 11.81 -107.50 -1.27 21.29 16 14 O -0.88 -20.58 15.86 -35.23 -0.56 -21.14 16 15 C -0.39 -6.75 2.34 -26.55 -0.06 -6.81 16 16 C -0.14 -2.67 5.13 -26.59 -0.14 -2.80 16 17 C 0.07 1.08 6.84 37.20 0.25 1.33 16 18 O -0.39 -6.46 10.77 -35.23 -0.38 -6.84 16 19 C 0.07 0.92 6.84 37.20 0.25 1.17 16 20 C -0.13 -1.96 5.43 -26.60 -0.14 -2.11 16 21 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.06 1.26 5.97 -51.93 -0.31 0.95 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.10 2.61 5.96 -51.93 -0.31 2.30 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.12 1.96 7.24 -51.92 -0.38 1.58 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.83 6.85 -51.93 -0.36 1.47 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 286.56 15.07 4.32 4.32 Total: -1.00 -29.86 286.56 -7.77 -37.64 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.45 Total: 3.49 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -0.04 Total: -30.22 kcal Atomic # 7 Polarization: -23.35 SS G_CDS: 0.63 Total: -22.72 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.94 Total: -27.98 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 22.56 SS G_CDS: -1.27 Total: 21.29 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.86 -7.77 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.051 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds