Wall clock time and date at job start Mon Mar 30 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46643 * 2 1 4 4 H 1.09003 * 109.46960 * 54.61015 * 3 2 1 5 5 C 1.50702 * 109.46863 * 174.60564 * 3 2 1 6 6 H 1.08002 * 119.99730 * 119.72451 * 5 3 2 7 7 C 1.37878 * 120.00231 * 299.99985 * 5 3 2 8 8 N 1.31513 * 120.00083 * 359.72637 * 7 5 3 9 9 Si 1.86803 * 119.99844 * 179.72151 * 7 5 3 10 10 H 1.48500 * 109.46830 * 60.00499 * 9 7 5 11 11 H 1.48504 * 109.46677 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47215 * 300.00346 * 9 7 5 13 13 S 1.81393 * 109.47257 * 294.60931 * 3 2 1 14 14 O 1.42095 * 109.47461 * 67.36652 * 13 3 2 15 15 C 1.81403 * 103.00046 * 183.75439 * 13 3 2 16 16 C 1.53177 * 109.54277 * 303.85062 * 15 13 3 17 17 C 1.53091 * 109.16326 * 183.15235 * 16 15 13 18 18 O 1.42902 * 109.41622 * 57.60520 * 17 16 15 19 19 C 1.42897 * 114.09788 * 298.84490 * 18 17 16 20 20 C 1.53089 * 109.41709 * 61.15625 * 19 18 17 21 21 H 1.08996 * 109.47318 * 306.46034 * 1 2 3 22 22 H 1.09002 * 109.47529 * 66.46673 * 1 2 3 23 23 H 1.09002 * 109.46973 * 186.46042 * 1 2 3 24 24 H 1.08993 * 109.47081 * 240.00132 * 2 1 3 25 25 H 1.09002 * 109.46738 * 119.99916 * 2 1 3 26 26 H 0.96998 * 120.00093 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.54109 * 64.11270 * 15 13 3 28 28 H 1.09003 * 109.52465 * 303.05478 * 16 15 13 29 29 H 1.09002 * 109.52639 * 63.24428 * 16 15 13 30 30 H 1.09003 * 109.48279 * 297.62559 * 17 16 15 31 31 H 1.08998 * 109.48301 * 177.59217 * 17 16 15 32 32 H 1.09001 * 109.48139 * 301.16900 * 19 18 17 33 33 H 1.09010 * 109.49002 * 181.14887 * 19 18 17 34 34 H 1.08999 * 109.52380 * 182.48533 * 20 19 18 35 35 H 1.08999 * 109.51961 * 62.29930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5998 1.9834 0.8378 5 6 3.5410 1.4447 0.1336 6 1 4.1515 1.8835 -0.6418 7 6 4.1353 0.8813 1.2429 8 7 3.3919 0.3469 2.1870 9 14 5.9963 0.8771 1.4046 10 1 6.4965 2.2753 1.4008 11 1 6.3809 0.2167 2.6779 12 1 6.5906 0.1356 0.2637 13 16 1.5700 2.2500 -1.5548 14 8 0.1579 2.4011 -1.6022 15 6 2.3484 3.8828 -1.4183 16 6 1.8713 4.5723 -0.1364 17 6 2.4712 5.9792 -0.0694 18 8 2.0911 6.7138 -1.2347 19 6 2.5505 6.1415 -2.4608 20 6 1.9538 4.7411 -2.6240 21 1 -0.3634 0.6107 0.8265 22 1 -0.3634 0.4103 -0.9422 23 1 -0.3633 -1.0212 0.1156 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8100 -0.0497 2.9672 27 1 3.4322 3.7688 -1.3909 28 1 0.7834 4.6402 -0.1426 29 1 2.1963 3.9961 0.7299 30 1 3.5580 5.9091 -0.0224 31 1 2.1011 6.4903 0.8193 32 1 3.6383 6.0735 -2.4452 33 1 2.2376 6.7695 -3.2951 34 1 2.3377 4.2856 -3.5367 35 1 0.8676 4.8124 -2.6804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:04 Heat of formation + Delta-G solvation = -124.513019 kcal Electronic energy + Delta-G solvation = -16986.423738 eV Core-core repulsion = 14302.662685 eV Total energy + Delta-G solvation = -2683.761053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.07621 -36.58850 -36.38761 -34.64876 -33.46057 -32.07849 -29.40461 -26.04102 -25.22441 -24.53003 -22.21994 -21.25088 -18.68875 -18.08295 -17.41404 -16.98793 -16.88108 -16.16158 -15.73186 -15.48233 -15.04841 -14.90736 -14.54054 -14.02814 -13.77886 -13.49996 -13.24921 -13.12968 -12.82034 -12.59144 -12.43935 -12.33241 -12.04630 -11.96786 -11.73156 -11.65018 -11.45522 -11.05521 -10.82341 -10.47454 -9.98370 -8.77352 -8.03961 -6.23243 1.03076 1.52970 1.53843 1.59768 2.09233 2.49524 2.96285 3.19440 3.23975 3.71691 3.85890 4.04081 4.23774 4.28896 4.37615 4.50842 4.57458 4.61131 4.67532 4.73798 4.78348 4.84033 4.97058 5.03157 5.10619 5.21738 5.24468 5.28230 5.56949 5.75052 5.90244 6.22460 6.24793 6.87346 7.46232 9.00381 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.009957 C = 0.007494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.646931 B = 2811.285843 C = 3735.189879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C -0.223 4.223 4 H 0.002 0.998 5 C -0.507 4.507 6 H 0.094 0.906 7 C 0.019 3.981 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.300 1.300 12 H -0.257 1.257 13 S 1.238 4.762 14 O -0.922 6.922 15 C -0.392 4.392 16 C -0.144 4.144 17 C 0.071 3.929 18 O -0.406 6.406 19 C 0.061 3.939 20 C -0.132 4.132 21 H 0.018 0.982 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.258 0.742 27 H 0.143 0.857 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 5.933 -9.645 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.343 4.343 4 H 0.020 0.980 5 C -0.546 4.546 6 H 0.112 0.888 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.227 1.227 12 H -0.181 1.181 13 S 1.444 4.556 14 O -0.918 6.918 15 C -0.510 4.510 16 C -0.182 4.182 17 C -0.006 4.006 18 O -0.326 6.326 19 C -0.016 4.016 20 C -0.170 4.170 21 H 0.037 0.963 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.161 0.839 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.299 5.648 -10.253 12.162 hybrid contribution -0.169 0.499 2.845 2.893 sum 3.130 6.147 -7.408 10.122 Atomic orbital electron populations 1.22005 0.98115 1.00625 1.00731 1.21267 0.92407 0.97439 1.03049 1.24758 1.01956 1.00007 1.07597 0.97961 1.20945 0.88808 1.38582 1.06215 0.88769 1.25778 1.02256 0.94652 0.95445 1.70057 1.36912 1.39037 1.09760 0.85663 0.80301 0.78745 0.77360 1.19181 1.22686 1.18114 1.68925 0.89541 0.92047 1.05106 1.92866 1.30131 1.84451 1.84312 1.27405 1.10919 1.14023 0.98623 1.22072 0.99159 0.98810 0.98164 1.22509 0.99367 0.90443 0.88296 1.87847 1.78518 1.50896 1.15295 1.22788 0.99146 0.93296 0.86405 1.21957 1.00766 0.96719 0.97578 0.96259 0.92438 0.92090 0.91631 0.90742 0.93268 0.83894 0.94730 0.91595 0.91315 0.88808 0.90901 0.86733 0.86514 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.91 9.36 71.98 0.67 -6.23 16 2 C -0.10 -4.70 5.24 30.59 0.16 -4.54 16 3 C -0.22 -10.32 1.60 29.85 0.05 -10.27 16 4 H 0.00 0.11 7.22 -2.39 -0.02 0.10 16 5 C -0.51 -23.38 8.07 25.60 0.21 -23.17 16 6 H 0.09 3.75 6.86 -2.91 -0.02 3.73 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.92 -50.29 11.31 21.45 0.24 -50.05 16 9 Si 0.95 38.64 29.54 68.60 2.03 40.67 16 10 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 11 H -0.30 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 13 S 1.24 46.31 11.81 -56.49 -0.67 45.64 16 14 O -0.92 -43.34 15.86 -148.98 -2.36 -45.70 16 15 C -0.39 -12.62 2.34 30.71 0.07 -12.54 16 16 C -0.14 -5.30 5.13 30.68 0.16 -5.14 16 17 C 0.07 2.18 6.84 72.01 0.49 2.68 16 18 O -0.41 -12.41 10.77 -148.98 -1.60 -14.02 16 19 C 0.06 1.43 6.84 72.01 0.49 1.92 16 20 C -0.13 -3.50 5.43 30.68 0.17 -3.33 16 21 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.06 2.52 5.97 -2.39 -0.01 2.50 16 23 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.07 3.89 5.96 -2.39 -0.01 3.87 16 26 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 27 H 0.14 4.07 7.24 -2.39 -0.02 4.05 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.74 6.85 -2.39 -0.02 2.72 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -66.15 286.56 1.61 -64.54 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.06 Total: 18.16 kcal Atomic # 6 Polarization: -62.17 SS G_CDS: 2.92 Total: -59.25 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.24 Total: -50.05 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -3.97 Total: -59.72 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: 46.31 SS G_CDS: -0.67 Total: 45.64 kcal Total: -66.15 1.61 -64.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.973 kcal (2) G-P(sol) polarization free energy of solvation -66.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds