Wall clock time and date at job start Mon Mar 30 2020 03:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46856 * 2 1 4 4 H 1.08997 * 109.47435 * 174.37873 * 3 2 1 5 5 C 1.50703 * 109.47088 * 54.38031 * 3 2 1 6 6 H 1.07996 * 120.00296 * 245.89470 * 5 3 2 7 7 C 1.37878 * 119.99808 * 65.89969 * 5 3 2 8 8 N 1.31511 * 120.00105 * 6.28117 * 7 5 3 9 9 Si 1.86797 * 119.99774 * 186.28829 * 7 5 3 10 10 H 1.48500 * 109.47255 * 269.99733 * 9 7 5 11 11 H 1.48502 * 109.47326 * 29.99561 * 9 7 5 12 12 H 1.48501 * 109.47192 * 149.99560 * 9 7 5 13 13 S 1.81399 * 109.47307 * 294.38266 * 3 2 1 14 14 O 1.42098 * 109.47114 * 62.04090 * 13 3 2 15 15 C 1.81404 * 102.99737 * 305.65130 * 13 3 2 16 16 C 1.53170 * 109.54653 * 304.33974 * 15 13 3 17 17 C 1.53090 * 109.16633 * 183.15211 * 16 15 13 18 18 O 1.42899 * 109.41298 * 57.61108 * 17 16 15 19 19 C 1.42901 * 114.09717 * 298.84042 * 18 17 16 20 20 C 1.53092 * 109.41311 * 61.16159 * 19 18 17 21 21 H 1.08996 * 109.47379 * 305.69660 * 1 2 3 22 22 H 1.09007 * 109.47190 * 65.70042 * 1 2 3 23 23 H 1.09003 * 109.46992 * 185.69643 * 1 2 3 24 24 H 1.08997 * 109.47244 * 240.00050 * 2 1 3 25 25 H 1.08999 * 109.47295 * 119.99700 * 2 1 3 26 26 H 0.96999 * 120.00336 * 355.38008 * 8 7 5 27 27 H 1.08997 * 109.54112 * 64.61108 * 15 13 3 28 28 H 1.08995 * 109.52719 * 303.05988 * 16 15 13 29 29 H 1.09006 * 109.51840 * 63.24463 * 16 15 13 30 30 H 1.09001 * 109.48046 * 297.62728 * 17 16 15 31 31 H 1.09002 * 109.48101 * 177.59838 * 17 16 15 32 32 H 1.08998 * 109.48178 * 301.17748 * 19 18 17 33 33 H 1.08999 * 109.48860 * 181.14661 * 19 18 17 34 34 H 1.09006 * 109.52040 * 182.48309 * 20 19 18 35 35 H 1.08996 * 109.52313 * 62.29532 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1253 1.4443 0.1007 5 6 1.4272 2.1919 1.1550 6 1 0.7432 3.0066 0.9682 7 6 1.7398 1.8375 2.4503 8 7 2.6642 0.9305 2.6790 9 14 0.8502 2.6457 3.8803 10 1 1.5897 3.8637 4.2985 11 1 -0.5239 3.0207 3.4602 12 1 0.7777 1.6952 5.0189 13 16 1.5758 2.2480 -1.5577 14 8 0.1596 2.2880 -1.6666 15 6 2.2474 1.1246 -2.8138 16 6 3.7471 0.9254 -2.5739 17 6 4.3203 0.0400 -3.6835 18 8 4.0665 0.6452 -4.9529 19 6 2.6793 0.8132 -5.2522 20 6 2.0402 1.7297 -4.2057 21 1 -0.3634 0.5996 0.8345 22 1 -0.3634 0.4229 -0.9367 23 1 -0.3633 -1.0226 0.1020 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.0785 0.4625 1.9372 27 1 1.7364 0.1637 -2.7541 28 1 4.2493 1.8927 -2.5839 29 1 3.9006 0.4442 -1.6079 30 1 3.8463 -0.9409 -3.6471 31 1 5.3954 -0.0702 -3.5417 32 1 2.1839 -0.1576 -5.2364 33 1 2.5721 1.2600 -6.2407 34 1 0.9730 1.8236 -4.4069 35 1 2.5079 2.7132 -4.2486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:12 Heat of formation + Delta-G solvation = -104.460545 kcal Electronic energy + Delta-G solvation = -17023.860800 eV Core-core repulsion = 14340.969288 eV Total energy + Delta-G solvation = -2682.891512 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.03466 -35.44746 -34.67370 -33.48426 -31.37003 -30.91775 -26.82307 -25.10500 -23.97052 -23.26940 -20.37985 -20.26511 -17.45597 -16.52385 -16.02527 -15.89300 -15.22105 -14.68244 -14.19879 -13.90296 -13.84164 -13.73606 -13.32314 -12.41879 -12.33480 -12.02484 -11.73347 -11.46362 -11.30297 -11.18095 -10.82715 -10.67463 -10.63800 -10.29600 -10.21530 -10.16144 -9.94619 -9.69185 -8.95814 -8.52096 -8.40784 -7.23887 -6.44766 -4.21450 2.40099 3.37410 3.43354 3.57698 3.63915 3.93318 4.42068 4.58600 4.85844 4.96217 5.12953 5.25372 5.30439 5.33520 5.54243 5.58315 5.69656 5.85440 5.91060 6.05106 6.08019 6.11810 6.16393 6.26626 6.37097 6.73819 6.84763 6.97778 7.21533 7.22993 7.41517 7.87106 8.26599 8.69569 9.49767 10.90787 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.007138 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.566959 B = 3921.860147 C = 4158.514727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.240 4.240 4 H 0.072 0.928 5 C -0.579 4.579 6 H 0.056 0.944 7 C 0.033 3.967 8 N -0.903 5.903 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.284 1.284 13 S 1.214 4.786 14 O -0.855 6.855 15 C -0.424 4.424 16 C -0.127 4.127 17 C 0.064 3.936 18 O -0.385 6.385 19 C 0.067 3.933 20 C -0.126 4.126 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.273 0.727 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 0.819 -11.264 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.361 4.361 4 H 0.090 0.910 5 C -0.618 4.618 6 H 0.074 0.926 7 C -0.173 4.173 8 N -0.538 5.538 9 Si 0.893 3.107 10 H -0.211 1.211 11 H -0.213 1.213 12 H -0.209 1.209 13 S 1.416 4.584 14 O -0.850 6.850 15 C -0.538 4.538 16 C -0.166 4.166 17 C -0.013 4.013 18 O -0.304 6.304 19 C -0.011 4.011 20 C -0.164 4.164 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.338 1.799 -9.921 10.622 hybrid contribution -1.102 -2.481 -1.155 2.950 sum 2.236 -0.681 -11.077 11.321 Atomic orbital electron populations 1.21901 0.96281 0.99088 1.03771 1.21648 0.96284 0.97897 0.99742 1.24877 1.02709 0.99582 1.08915 0.91044 1.21267 1.30679 1.18961 0.90920 0.92568 1.25729 0.95394 0.96547 0.99676 1.70768 1.22682 1.24256 1.36138 0.83590 0.75783 0.75960 0.75326 1.21055 1.21273 1.20937 1.69818 0.94957 1.06101 0.87499 1.92987 1.27576 1.80014 1.84418 1.27692 1.03324 1.12878 1.09945 1.21855 0.93077 1.01936 0.99696 1.22574 1.00664 0.94933 0.83158 1.87875 1.24226 1.82129 1.36148 1.22515 0.82206 0.98368 0.98035 1.21784 1.01479 0.99978 0.93206 0.90904 0.92293 0.95652 0.95660 0.91697 0.91530 0.89801 0.89806 0.89956 0.93723 0.88821 0.93737 0.89038 0.90939 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.19 37.16 0.34 -3.28 16 2 C -0.12 -2.65 5.25 -26.73 -0.14 -2.79 16 3 C -0.24 -5.40 1.49 -27.88 -0.04 -5.44 16 4 H 0.07 1.58 6.80 -51.93 -0.35 1.22 16 5 C -0.58 -15.25 6.85 -34.44 -0.24 -15.49 16 6 H 0.06 1.53 7.73 -52.49 -0.41 1.13 16 7 C 0.03 0.90 5.28 -17.82 -0.09 0.81 16 8 N -0.90 -25.50 13.21 55.43 0.73 -24.77 16 9 Si 1.07 24.57 29.91 -169.99 -5.08 19.48 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 S 1.21 22.93 11.98 -107.50 -1.29 21.64 16 14 O -0.85 -20.52 15.46 -35.23 -0.54 -21.06 16 15 C -0.42 -6.59 2.04 -26.55 -0.05 -6.64 16 16 C -0.13 -1.72 5.11 -26.60 -0.14 -1.86 16 17 C 0.06 0.81 6.84 37.20 0.25 1.06 16 18 O -0.38 -5.22 10.77 -35.23 -0.38 -5.60 16 19 C 0.07 0.82 6.84 37.20 0.25 1.07 16 20 C -0.13 -1.70 5.43 -26.59 -0.14 -1.84 16 21 H 0.07 1.89 6.84 -51.93 -0.36 1.54 16 22 H 0.06 1.42 5.68 -51.93 -0.29 1.13 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.50 6.05 -51.93 -0.31 0.19 16 25 H 0.06 1.60 6.26 -51.93 -0.33 1.27 16 26 H 0.27 7.52 5.68 -40.82 -0.23 7.29 16 27 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.17 6.64 -51.93 -0.34 0.83 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 280.79 15.07 4.23 4.23 Total: -1.00 -32.23 280.79 -7.49 -39.72 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.17 Total: 0.75 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 0.00 Total: -34.39 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.73 Total: -24.77 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.92 Total: -26.66 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.48 kcal Atomic # 16 Polarization: 22.93 SS G_CDS: -1.29 Total: 21.64 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.23 -7.49 -39.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.737 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds