Wall clock time and date at job start Mon Mar 30 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46856 * 2 1 4 4 H 1.08997 * 109.47435 * 174.37873 * 3 2 1 5 5 C 1.50703 * 109.47088 * 54.38031 * 3 2 1 6 6 H 1.07996 * 120.00296 * 245.89470 * 5 3 2 7 7 C 1.37878 * 119.99808 * 65.89969 * 5 3 2 8 8 N 1.31511 * 120.00105 * 6.28117 * 7 5 3 9 9 Si 1.86797 * 119.99774 * 186.28829 * 7 5 3 10 10 H 1.48500 * 109.47255 * 269.99733 * 9 7 5 11 11 H 1.48502 * 109.47326 * 29.99561 * 9 7 5 12 12 H 1.48501 * 109.47192 * 149.99560 * 9 7 5 13 13 S 1.81399 * 109.47307 * 294.38266 * 3 2 1 14 14 O 1.42098 * 109.47114 * 62.04090 * 13 3 2 15 15 C 1.81404 * 102.99737 * 305.65130 * 13 3 2 16 16 C 1.53170 * 109.54653 * 304.33974 * 15 13 3 17 17 C 1.53090 * 109.16633 * 183.15211 * 16 15 13 18 18 O 1.42899 * 109.41298 * 57.61108 * 17 16 15 19 19 C 1.42901 * 114.09717 * 298.84042 * 18 17 16 20 20 C 1.53092 * 109.41311 * 61.16159 * 19 18 17 21 21 H 1.08996 * 109.47379 * 305.69660 * 1 2 3 22 22 H 1.09007 * 109.47190 * 65.70042 * 1 2 3 23 23 H 1.09003 * 109.46992 * 185.69643 * 1 2 3 24 24 H 1.08997 * 109.47244 * 240.00050 * 2 1 3 25 25 H 1.08999 * 109.47295 * 119.99700 * 2 1 3 26 26 H 0.96999 * 120.00336 * 355.38008 * 8 7 5 27 27 H 1.08997 * 109.54112 * 64.61108 * 15 13 3 28 28 H 1.08995 * 109.52719 * 303.05988 * 16 15 13 29 29 H 1.09006 * 109.51840 * 63.24463 * 16 15 13 30 30 H 1.09001 * 109.48046 * 297.62728 * 17 16 15 31 31 H 1.09002 * 109.48101 * 177.59838 * 17 16 15 32 32 H 1.08998 * 109.48178 * 301.17748 * 19 18 17 33 33 H 1.08999 * 109.48860 * 181.14661 * 19 18 17 34 34 H 1.09006 * 109.52040 * 182.48309 * 20 19 18 35 35 H 1.08996 * 109.52313 * 62.29532 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1253 1.4443 0.1007 5 6 1.4272 2.1919 1.1550 6 1 0.7432 3.0066 0.9682 7 6 1.7398 1.8375 2.4503 8 7 2.6642 0.9305 2.6790 9 14 0.8502 2.6457 3.8803 10 1 1.5897 3.8637 4.2985 11 1 -0.5239 3.0207 3.4602 12 1 0.7777 1.6952 5.0189 13 16 1.5758 2.2480 -1.5577 14 8 0.1596 2.2880 -1.6666 15 6 2.2474 1.1246 -2.8138 16 6 3.7471 0.9254 -2.5739 17 6 4.3203 0.0400 -3.6835 18 8 4.0665 0.6452 -4.9529 19 6 2.6793 0.8132 -5.2522 20 6 2.0402 1.7297 -4.2057 21 1 -0.3634 0.5996 0.8345 22 1 -0.3634 0.4229 -0.9367 23 1 -0.3633 -1.0226 0.1020 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.0785 0.4625 1.9372 27 1 1.7364 0.1637 -2.7541 28 1 4.2493 1.8927 -2.5839 29 1 3.9006 0.4442 -1.6079 30 1 3.8463 -0.9409 -3.6471 31 1 5.3954 -0.0702 -3.5417 32 1 2.1839 -0.1576 -5.2364 33 1 2.5721 1.2600 -6.2407 34 1 0.9730 1.8236 -4.4069 35 1 2.5079 2.7132 -4.2486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:11 Heat of formation + Delta-G solvation = -126.268936 kcal Electronic energy + Delta-G solvation = -17024.806483 eV Core-core repulsion = 14340.969288 eV Total energy + Delta-G solvation = -2683.837195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07664 -37.33360 -36.45332 -34.68099 -33.27285 -32.00504 -28.75222 -26.40272 -25.68436 -24.41972 -22.22219 -21.45143 -19.26250 -18.09845 -17.33234 -16.92661 -16.73898 -15.84525 -15.77436 -15.56961 -15.50085 -15.28190 -14.67330 -14.12233 -13.97632 -13.58398 -13.21894 -13.09469 -12.71707 -12.63556 -12.44353 -12.26232 -12.11328 -12.01940 -11.89081 -11.71571 -11.39427 -10.97645 -10.75250 -10.43701 -10.09948 -8.90811 -8.53635 -6.32275 0.86318 1.50958 1.58767 1.75683 2.04099 2.52558 2.98400 3.06548 3.21406 3.70179 3.77359 4.08380 4.15564 4.18819 4.25538 4.32358 4.38635 4.54813 4.55281 4.72244 4.78254 4.82029 4.86115 4.97351 5.04784 5.09176 5.13715 5.25266 5.32610 5.43311 5.86902 6.20163 6.24939 6.61323 7.43661 8.80958 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.007138 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.566959 B = 3921.860147 C = 4158.514727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.255 4.255 4 H 0.078 0.922 5 C -0.586 4.586 6 H 0.039 0.961 7 C -0.009 4.009 8 N -0.927 5.927 9 Si 1.098 2.902 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.285 1.285 13 S 1.257 4.743 14 O -0.908 6.908 15 C -0.409 4.409 16 C -0.130 4.130 17 C 0.064 3.936 18 O -0.392 6.392 19 C 0.067 3.933 20 C -0.129 4.129 21 H 0.041 0.959 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.268 0.732 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.116 0.884 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.782 0.983 -12.770 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.375 4.375 4 H 0.096 0.904 5 C -0.625 4.625 6 H 0.057 0.943 7 C -0.211 4.211 8 N -0.564 5.564 9 Si 0.922 3.078 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.211 1.211 13 S 1.462 4.538 14 O -0.903 6.903 15 C -0.527 4.527 16 C -0.168 4.168 17 C -0.013 4.013 18 O -0.311 6.311 19 C -0.011 4.011 20 C -0.168 4.168 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.134 0.866 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.328 1.986 -11.393 12.348 hybrid contribution -1.396 -2.577 -0.840 3.048 sum 2.933 -0.591 -12.232 12.593 Atomic orbital electron populations 1.21821 0.97066 0.99606 1.02019 1.21574 0.95462 0.98096 0.99888 1.24974 1.02791 0.99347 1.10402 0.90450 1.21491 1.29966 1.18576 0.92418 0.94276 1.26772 0.95522 0.96677 1.02150 1.70850 1.24032 1.25457 1.36026 0.83151 0.75245 0.76146 0.73250 1.18770 1.21168 1.21083 1.69125 0.92755 1.06036 0.85892 1.92895 1.30572 1.81820 1.85031 1.27503 1.04470 1.11043 1.09661 1.21950 0.91412 1.03451 0.99998 1.22657 1.02013 0.94353 0.82291 1.87881 1.24716 1.82124 1.36359 1.22616 0.81583 0.98177 0.98679 1.21887 1.01634 1.01311 0.91926 0.93950 0.92899 0.93721 0.92955 0.93954 0.92097 0.91200 0.87818 0.90655 0.93844 0.86563 0.93837 0.86433 0.91571 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.03 9.19 71.98 0.66 -6.37 16 2 C -0.11 -5.04 5.25 30.59 0.16 -4.88 16 3 C -0.26 -11.50 1.49 29.85 0.04 -11.46 16 4 H 0.08 3.39 6.80 -2.39 -0.02 3.37 16 5 C -0.59 -31.26 6.85 25.60 0.18 -31.08 16 6 H 0.04 2.18 7.73 -2.91 -0.02 2.15 16 7 C -0.01 -0.52 5.28 84.66 0.45 -0.07 16 8 N -0.93 -52.84 13.21 21.45 0.28 -52.55 16 9 Si 1.10 49.74 29.91 68.60 2.05 51.79 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 S 1.26 46.58 11.98 -56.49 -0.68 45.90 16 14 O -0.91 -43.68 15.46 -148.98 -2.30 -45.98 16 15 C -0.41 -11.87 2.04 30.71 0.06 -11.81 16 16 C -0.13 -3.16 5.11 30.68 0.16 -3.00 16 17 C 0.06 1.41 6.84 72.01 0.49 1.90 16 18 O -0.39 -9.21 10.77 -148.98 -1.60 -10.81 16 19 C 0.07 1.43 6.84 72.01 0.49 1.92 16 20 C -0.13 -3.12 5.43 30.68 0.17 -2.95 16 21 H 0.04 2.24 6.84 -2.39 -0.02 2.22 16 22 H 0.05 2.56 5.68 -2.38 -0.01 2.55 16 23 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.05 2.05 6.05 -2.39 -0.01 2.04 16 25 H 0.04 2.10 6.26 -2.39 -0.01 2.08 16 26 H 0.27 14.97 5.68 -92.71 -0.53 14.45 16 27 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 1.98 6.64 -2.38 -0.02 1.96 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.25 280.79 1.92 -67.33 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.31 Total: 12.11 kcal Atomic # 6 Polarization: -70.65 SS G_CDS: 2.86 Total: -67.79 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.28 Total: -52.55 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -3.91 Total: -56.79 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Atomic # 16 Polarization: 46.58 SS G_CDS: -0.68 Total: 45.90 kcal Total: -69.25 1.92 -67.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.934 kcal (2) G-P(sol) polarization free energy of solvation -69.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds