Wall clock time and date at job start Mon Mar 30 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42099 * 109.47018 * 63.61397 * 12 11 10 14 14 C 1.81397 * 103.00143 * 180.02562 * 12 11 10 15 15 C 1.53181 * 109.53959 * 304.82356 * 14 12 11 16 16 C 1.53115 * 109.15493 * 183.24065 * 15 14 12 17 17 O 1.42899 * 109.48471 * 57.47042 * 16 15 14 18 18 C 1.42899 * 114.10188 * 298.88797 * 17 16 15 19 19 C 1.53098 * 109.41439 * 61.16071 * 18 17 16 20 20 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 22 22 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 23 23 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 24 24 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 25 25 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 26 26 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 27 27 H 1.09007 * 109.54518 * 64.99570 * 14 12 11 28 28 H 1.08995 * 109.52261 * 303.05455 * 15 14 12 29 29 H 1.09001 * 109.52607 * 63.25035 * 15 14 12 30 30 H 1.09001 * 109.40517 * 297.49182 * 16 15 14 31 31 H 1.08993 * 109.47883 * 177.50210 * 16 15 14 32 32 H 1.08997 * 109.47912 * 301.18000 * 18 17 16 33 33 H 1.09000 * 109.49240 * 181.14241 * 18 17 16 34 34 H 1.08995 * 109.52242 * 182.48600 * 19 18 17 35 35 H 1.09003 * 109.57394 * 62.32861 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.4201 -6.3390 1.1977 14 6 1.5806 -7.8247 -0.0019 15 6 0.6136 -7.7469 1.1836 16 6 -0.2369 -9.0195 1.2225 17 8 0.6176 -10.1613 1.3124 18 6 1.5099 -10.3109 0.2062 19 6 2.4321 -9.0913 0.1278 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8725 -3.6048 0.8878 24 1 2.8712 -3.6040 -0.8921 25 1 0.8543 -5.0449 0.8894 26 1 0.8525 -5.0447 -0.8905 27 1 1.0143 -7.8596 -0.9326 28 1 1.1801 -7.6604 2.1107 29 1 -0.0341 -6.8777 1.0690 30 1 -0.8347 -9.0835 0.3133 31 1 -0.8962 -8.9896 2.0899 32 1 0.9349 -10.3917 -0.7162 33 1 2.1090 -11.2114 0.3414 34 1 3.0836 -9.1827 -0.7412 35 1 3.0373 -9.0324 1.0324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:03 Heat of formation + Delta-G solvation = -110.446041 kcal Electronic energy + Delta-G solvation = -15862.414137 eV Core-core repulsion = 13179.263074 eV Total energy + Delta-G solvation = -2683.151063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31404 -35.44925 -34.46061 -33.85200 -32.08091 -31.30677 -27.54922 -25.39812 -24.01758 -23.17564 -20.64456 -20.20151 -17.49091 -16.54008 -16.31964 -16.20075 -15.36655 -15.07495 -14.75380 -14.50351 -14.29405 -13.76886 -13.70261 -12.77584 -12.53426 -12.32196 -11.96060 -11.72507 -11.56632 -11.30914 -11.02831 -10.87925 -10.81053 -10.77715 -10.64070 -10.19806 -9.84446 -9.75473 -9.22299 -8.97701 -8.36601 -7.94997 -6.01780 -4.04509 1.69555 2.81366 3.33127 3.37239 3.40231 3.69103 3.96485 4.41560 4.45123 4.58605 4.78993 4.94550 5.01254 5.24303 5.27809 5.33867 5.41942 5.44370 5.49390 5.53884 5.60139 5.78994 5.82235 6.02606 6.19320 6.50030 6.68870 6.99068 7.03100 7.63823 7.76598 7.97411 8.39361 9.02190 9.59781 11.09452 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.052995 B = 0.004187 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.228701 B = 6685.652179 C = 7020.293542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.430 4.430 12 S 1.229 4.771 13 O -0.846 6.846 14 C -0.419 4.419 15 C -0.153 4.153 16 C 0.066 3.934 17 O -0.385 6.385 18 C 0.065 3.935 19 C -0.132 4.132 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.014 0.986 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -19.100 -4.790 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.569 4.569 12 S 1.430 4.570 13 O -0.842 6.842 14 C -0.534 4.534 15 C -0.191 4.191 16 C -0.011 4.011 17 O -0.304 6.304 18 C -0.012 4.012 19 C -0.171 4.171 20 H 0.071 0.929 21 H 0.037 0.963 22 H 0.032 0.968 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.400 -19.103 -4.616 19.799 hybrid contribution -1.091 1.211 1.558 2.254 sum 1.309 -17.892 -3.058 18.199 Atomic orbital electron populations 1.69957 1.06090 1.26750 1.50791 1.25026 0.94862 0.99296 0.95237 0.86638 0.79581 0.82987 0.78701 1.20110 1.21280 1.20235 1.21240 0.93119 0.91056 1.50767 0.92597 1.19085 0.93795 0.90923 0.97293 1.21311 0.98941 0.91896 1.01054 1.27657 1.11493 1.10646 1.07094 1.70242 0.88183 0.85841 1.12705 1.93106 1.56088 1.83881 1.51085 1.27728 1.08983 1.13314 1.03424 1.22260 0.98877 0.99648 0.98287 1.22524 0.91733 0.84921 1.01956 1.87918 1.51885 1.45759 1.44819 1.22538 0.91536 0.97583 0.89577 1.21856 0.98108 0.93461 1.03645 0.92935 0.96295 0.96784 0.92857 0.92167 0.89932 0.86978 0.86140 0.90744 0.90070 0.92953 0.88979 0.92974 0.88854 0.89791 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.90 5.16 -26.73 -0.14 -2.03 16 11 C -0.43 -6.70 5.34 37.16 0.20 -6.50 16 12 S 1.23 15.51 12.68 -107.50 -1.36 14.15 16 13 O -0.85 -16.19 18.13 -35.23 -0.64 -16.82 16 14 C -0.42 -4.32 2.80 -26.55 -0.07 -4.40 16 15 C -0.15 -1.84 5.09 -26.58 -0.14 -1.98 16 16 C 0.07 0.71 6.84 37.22 0.25 0.97 16 17 O -0.39 -4.69 10.77 -35.23 -0.38 -5.07 16 18 C 0.07 0.60 6.84 37.21 0.25 0.86 16 19 C -0.13 -1.28 5.42 -26.59 -0.14 -1.43 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.39 6.99 -51.92 -0.36 1.02 16 26 H 0.11 1.46 8.14 -51.92 -0.42 1.04 16 27 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.95 6.72 -51.93 -0.35 0.60 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -36.13 298.36 -8.25 -44.38 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -5.75 Total: -3.93 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -0.33 Total: -27.65 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.02 Total: -21.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 15.51 SS G_CDS: -1.36 Total: 14.15 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.13 -8.25 -44.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.067 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds