Wall clock time and date at job start Mon Mar 30 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42099 * 109.47018 * 63.61397 * 12 11 10 14 14 C 1.81397 * 103.00143 * 180.02562 * 12 11 10 15 15 C 1.53181 * 109.53959 * 304.82356 * 14 12 11 16 16 C 1.53115 * 109.15493 * 183.24065 * 15 14 12 17 17 O 1.42899 * 109.48471 * 57.47042 * 16 15 14 18 18 C 1.42899 * 114.10188 * 298.88797 * 17 16 15 19 19 C 1.53098 * 109.41439 * 61.16071 * 18 17 16 20 20 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 22 22 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 23 23 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 24 24 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 25 25 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 26 26 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 27 27 H 1.09007 * 109.54518 * 64.99570 * 14 12 11 28 28 H 1.08995 * 109.52261 * 303.05455 * 15 14 12 29 29 H 1.09001 * 109.52607 * 63.25035 * 15 14 12 30 30 H 1.09001 * 109.40517 * 297.49182 * 16 15 14 31 31 H 1.08993 * 109.47883 * 177.50210 * 16 15 14 32 32 H 1.08997 * 109.47912 * 301.18000 * 18 17 16 33 33 H 1.09000 * 109.49240 * 181.14241 * 18 17 16 34 34 H 1.08995 * 109.52242 * 182.48600 * 19 18 17 35 35 H 1.09003 * 109.57394 * 62.32861 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.4201 -6.3390 1.1977 14 6 1.5806 -7.8247 -0.0019 15 6 0.6136 -7.7469 1.1836 16 6 -0.2369 -9.0195 1.2225 17 8 0.6176 -10.1613 1.3124 18 6 1.5099 -10.3109 0.2062 19 6 2.4321 -9.0913 0.1278 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8725 -3.6048 0.8878 24 1 2.8712 -3.6040 -0.8921 25 1 0.8543 -5.0449 0.8894 26 1 0.8525 -5.0447 -0.8905 27 1 1.0143 -7.8596 -0.9326 28 1 1.1801 -7.6604 2.1107 29 1 -0.0341 -6.8777 1.0690 30 1 -0.8347 -9.0835 0.3133 31 1 -0.8962 -8.9896 2.0899 32 1 0.9349 -10.3917 -0.7162 33 1 2.1090 -11.2114 0.3414 34 1 3.0836 -9.1827 -0.7412 35 1 3.0373 -9.0324 1.0324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:03 Heat of formation + Delta-G solvation = -136.861990 kcal Electronic energy + Delta-G solvation = -15863.559618 eV Core-core repulsion = 13179.263074 eV Total energy + Delta-G solvation = -2684.296544 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13486 -36.80208 -36.31919 -34.74261 -34.04346 -32.14407 -29.41360 -26.29942 -25.43418 -24.47844 -22.13909 -21.31528 -18.73896 -18.32412 -17.42612 -17.04324 -16.64174 -16.31217 -16.19675 -15.79326 -15.56852 -14.78570 -14.71698 -14.33241 -14.09549 -13.78208 -13.33987 -13.18498 -12.72538 -12.68371 -12.50788 -12.37703 -12.30319 -11.88135 -11.81656 -11.65320 -11.49718 -11.29641 -10.94297 -10.56859 -10.34074 -9.10981 -8.21962 -6.33518 0.61803 1.39202 1.42386 1.50319 1.74347 2.40051 2.85033 2.96649 3.10963 3.56335 3.71775 3.94607 4.05460 4.15323 4.19604 4.24267 4.48861 4.52561 4.62538 4.69329 4.71904 4.74761 4.85282 4.92405 5.05338 5.15302 5.18236 5.19976 5.48523 5.68955 5.82299 6.22167 6.23813 6.82981 7.35934 8.89365 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.052995 B = 0.004187 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.228701 B = 6685.652179 C = 7020.293542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.088 4.088 11 C -0.436 4.436 12 S 1.295 4.705 13 O -0.915 6.915 14 C -0.410 4.410 15 C -0.159 4.159 16 C 0.067 3.933 17 O -0.412 6.412 18 C 0.060 3.940 19 C -0.136 4.136 20 H 0.264 0.736 21 H 0.009 0.991 22 H -0.021 1.021 23 H 0.027 0.973 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.145 0.855 27 H 0.167 0.833 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -20.144 -6.937 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.127 4.127 11 C -0.573 4.573 12 S 1.497 4.503 13 O -0.911 6.911 14 C -0.527 4.527 15 C -0.197 4.197 16 C -0.011 4.011 17 O -0.331 6.331 18 C -0.017 4.017 19 C -0.174 4.174 20 H 0.073 0.927 21 H 0.028 0.972 22 H -0.003 1.003 23 H 0.046 0.954 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.163 0.837 27 H 0.185 0.815 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.724 -20.118 -6.764 21.399 hybrid contribution -1.243 1.415 2.227 2.917 sum 1.482 -18.703 -4.537 19.302 Atomic orbital electron populations 1.70084 1.07763 1.27885 1.51550 1.25979 0.95801 1.03351 0.94596 0.85513 0.78330 0.78060 0.79248 1.18462 1.20665 1.19835 1.21730 0.93650 0.92588 1.50840 0.92230 1.19011 0.94299 0.92692 0.95021 1.21110 0.97972 0.92528 1.01042 1.27676 1.12014 1.09778 1.07809 1.69402 0.86295 0.84815 1.09752 1.92986 1.59350 1.85153 1.53603 1.27705 1.08459 1.11750 1.04835 1.22290 0.99219 1.00861 0.97355 1.22584 0.91475 0.83680 1.03357 1.87891 1.52604 1.46026 1.46575 1.22785 0.91457 0.97606 0.89889 1.21960 0.98382 0.93299 1.03795 0.92711 0.97244 1.00291 0.95368 0.89647 0.91816 0.83731 0.81498 0.94548 0.89935 0.90323 0.88980 0.90192 0.87474 0.86041 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.09 -3.62 5.16 30.59 0.16 -3.46 16 11 C -0.44 -13.30 5.34 71.98 0.38 -12.91 16 12 S 1.29 31.01 12.68 -56.49 -0.72 30.30 16 13 O -0.92 -35.70 18.13 -148.98 -2.70 -38.41 16 14 C -0.41 -7.32 2.80 30.71 0.09 -7.23 16 15 C -0.16 -3.71 5.09 30.69 0.16 -3.55 16 16 C 0.07 1.31 6.84 72.02 0.49 1.80 16 17 O -0.41 -9.29 10.77 -148.98 -1.60 -10.89 16 18 C 0.06 0.91 6.84 72.01 0.49 1.40 16 19 C -0.14 -2.27 5.42 30.68 0.17 -2.10 16 20 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 22 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.06 2.18 6.99 -2.39 -0.02 2.17 16 26 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.17 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.87 6.72 -2.39 -0.02 1.86 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -81.80 298.36 1.11 -80.69 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.04 Total: 4.02 kcal Atomic # 6 Polarization: -58.34 SS G_CDS: 2.78 Total: -55.56 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.28 Total: -56.78 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -4.30 Total: -49.30 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 31.01 SS G_CDS: -0.72 Total: 30.30 kcal Total: -81.80 1.11 -80.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.176 kcal (2) G-P(sol) polarization free energy of solvation -81.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds