Wall clock time and date at job start Mon Mar 30 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00267 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99757 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00364 * 3 2 1 7 7 C 1.38950 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99719 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00123 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00136 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00059 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.38893 * 59.80556 * 12 10 9 14 14 C 1.52899 * 109.39172 * 300.00283 * 12 10 9 15 15 N 1.47165 * 108.49070 * 189.44011 * 14 12 10 16 16 C 1.46629 * 110.25688 * 71.29218 * 15 14 12 17 17 C 1.50618 * 110.49762 * 307.53210 * 16 15 14 18 18 C 1.38737 * 118.42560 * 197.33703 * 17 16 15 19 19 C 1.38006 * 120.38305 * 180.16171 * 18 17 16 20 20 C 1.38262 * 119.87145 * 0.03467 * 19 18 17 21 21 C 1.38038 * 119.82427 * 359.91023 * 20 19 18 22 22 C 1.37833 * 121.85565 * 17.38274 * 17 16 15 23 23 H 0.97006 * 119.99833 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99562 * 359.97438 * 9 7 2 25 25 H 1.08999 * 109.63266 * 309.13824 * 14 12 10 26 26 H 1.08999 * 109.63590 * 69.73640 * 14 12 10 27 27 H 1.00897 * 111.00186 * 307.86232 * 15 14 12 28 28 H 1.09000 * 109.27330 * 67.79578 * 16 15 14 29 29 H 1.08999 * 109.26871 * 187.26882 * 16 15 14 30 30 H 1.08004 * 119.80917 * 0.18135 * 18 17 16 31 31 H 1.08001 * 120.06783 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.09089 * 179.89409 * 20 19 18 33 33 H 1.07998 * 119.82945 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 1 5.9227 -1.8534 0.8887 14 6 6.0685 -1.6493 -1.2490 15 7 7.5221 -1.8560 -1.3489 16 6 7.8133 -3.2450 -1.7174 17 6 7.1106 -4.1965 -0.7849 18 6 7.5418 -5.5143 -0.7379 19 6 6.9247 -6.4212 0.0996 20 6 5.8701 -6.0157 0.8964 21 6 5.4405 -4.7046 0.8518 22 6 6.0612 -3.7921 0.0120 23 1 -0.4850 0.8401 -0.0004 24 1 3.8649 -0.3632 0.0004 25 1 5.5788 -2.0586 -2.1327 26 1 5.8547 -0.5835 -1.1689 27 1 7.9829 -1.6065 -0.4867 28 1 7.4744 -3.4252 -2.7376 29 1 8.8885 -3.4143 -1.6610 30 1 8.3653 -5.8323 -1.3601 31 1 7.2648 -7.4457 0.1324 32 1 5.3836 -6.7228 1.5518 33 1 4.6170 -4.3876 1.4745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083643655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:35 Heat of formation + Delta-G solvation = -6.358433 kcal Electronic energy + Delta-G solvation = -17650.564705 eV Core-core repulsion = 14868.776020 eV Total energy + Delta-G solvation = -2781.788685 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32019 -38.06062 -36.33186 -34.15257 -32.31084 -31.68813 -30.52436 -29.05297 -25.45737 -23.94109 -23.29094 -22.05904 -20.18521 -19.31104 -18.37564 -16.39558 -16.11942 -15.82331 -15.19892 -14.99747 -14.79129 -13.89824 -13.76453 -13.53852 -13.13905 -12.91106 -12.75226 -12.33770 -12.06916 -11.85481 -11.69351 -11.43573 -11.22588 -11.03095 -10.63824 -10.50936 -10.01621 -9.61518 -8.94211 -8.48420 -8.34710 -8.24324 -8.18910 -6.36652 -3.88515 1.55865 1.69509 2.99730 3.03797 3.12715 3.62659 3.97371 4.05883 4.24999 4.61390 4.84428 4.93666 5.05006 5.16070 5.27436 5.28498 5.35087 5.49348 5.64386 5.74355 5.82382 5.90374 5.98262 6.10908 6.29992 6.35259 6.59450 6.79898 6.88485 6.95317 7.28292 7.31851 7.50892 8.07674 8.52148 8.88034 9.35699 9.73754 10.76076 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.006821 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.792788 B = 4103.881425 C = 4791.920360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.044 3.956 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.308 4.308 8 H 0.120 0.880 9 N -0.582 5.582 10 C 0.455 3.545 11 O -0.567 6.567 12 C -0.102 4.102 13 H 0.095 0.905 14 C 0.064 3.936 15 N -0.676 5.676 16 C 0.096 3.904 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.067 4.067 22 C -0.060 4.060 23 H 0.274 0.726 24 H 0.371 0.629 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.341 0.659 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.394 -4.142 -0.241 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.436 4.436 8 H 0.138 0.862 9 N -0.220 5.220 10 C 0.241 3.759 11 O -0.449 6.449 12 C -0.125 4.125 13 H 0.112 0.888 14 C -0.066 4.066 15 N -0.302 5.302 16 C -0.034 4.034 17 C -0.121 4.121 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.085 4.085 22 C -0.061 4.061 23 H 0.085 0.915 24 H 0.204 0.796 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.159 0.841 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.814 -4.446 -0.918 16.453 hybrid contribution 0.153 0.785 0.875 1.185 sum 15.967 -3.661 -0.043 16.381 Atomic orbital electron populations 1.69623 1.05681 1.27630 1.48815 1.25047 0.95495 0.98031 0.97412 0.86699 0.79930 0.84003 0.78997 1.19538 1.19292 1.20028 1.19447 0.79167 0.96681 1.48348 0.86234 1.42202 1.07536 1.06047 1.66213 1.19382 0.87628 0.84586 0.84343 1.90568 1.69195 1.30752 1.54431 1.20857 0.96052 0.94635 1.00959 0.88762 1.22125 0.87527 1.00327 0.96664 1.61045 1.09374 1.21055 1.38758 1.20951 0.99214 0.85471 0.97767 1.20378 0.97407 0.95786 0.98503 1.20873 1.00878 0.92839 1.00205 1.21011 0.96866 0.99010 0.97145 1.21111 0.97407 0.96330 1.00235 1.21358 0.96931 0.92747 0.97467 1.19094 0.95259 0.94685 0.97018 0.91509 0.79582 0.89878 0.89703 0.84143 0.89709 0.89854 0.86539 0.86634 0.86432 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.96 55.50 0.77 -24.60 16 2 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 3 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.59 4.99 -10.96 -0.05 -13.65 16 10 C 0.46 10.19 6.78 -10.99 -0.07 10.12 16 11 O -0.57 -14.86 13.25 5.55 0.07 -14.78 16 12 C -0.10 -1.73 2.69 -92.97 -0.25 -1.98 16 13 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.06 0.95 5.74 -3.73 -0.02 0.93 16 15 N -0.68 -8.48 6.96 -115.17 -0.80 -9.28 16 16 C 0.10 1.16 6.34 -5.16 -0.03 1.13 16 17 C -0.12 -1.73 5.79 -104.63 -0.61 -2.34 16 18 C -0.13 -1.70 9.65 -39.48 -0.38 -2.08 16 19 C -0.12 -1.64 10.05 -39.66 -0.40 -2.04 16 20 C -0.13 -2.03 10.05 -39.65 -0.40 -2.42 16 21 C -0.07 -1.20 8.09 -39.49 -0.32 -1.52 16 22 C -0.06 -1.02 5.27 -104.60 -0.55 -1.57 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.37 7.63 5.39 -40.82 -0.22 7.41 16 25 H 0.08 1.38 8.02 -51.93 -0.42 0.97 16 26 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.34 3.77 8.74 -39.29 -0.34 3.42 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.13 2.62 6.54 -52.49 -0.34 2.28 16 LS Contribution 274.56 15.07 4.14 4.14 Total: -1.00 -31.40 274.56 -7.69 -39.09 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -3.82 Total: 14.13 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -3.28 Total: -9.41 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.08 Total: -47.52 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.07 Total: -14.78 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.40 -7.69 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083643655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.731 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds