Wall clock time and date at job start Mon Mar 30 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00267 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99757 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00364 * 3 2 1 7 7 C 1.38950 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99719 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00123 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00136 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00059 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.38893 * 59.80556 * 12 10 9 14 14 C 1.52899 * 109.39172 * 300.00283 * 12 10 9 15 15 N 1.47165 * 108.49070 * 189.44011 * 14 12 10 16 16 C 1.46629 * 110.25688 * 71.29218 * 15 14 12 17 17 C 1.50618 * 110.49762 * 307.53210 * 16 15 14 18 18 C 1.38737 * 118.42560 * 197.33703 * 17 16 15 19 19 C 1.38006 * 120.38305 * 180.16171 * 18 17 16 20 20 C 1.38262 * 119.87145 * 0.03467 * 19 18 17 21 21 C 1.38038 * 119.82427 * 359.91023 * 20 19 18 22 22 C 1.37833 * 121.85565 * 17.38274 * 17 16 15 23 23 H 0.97006 * 119.99833 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99562 * 359.97438 * 9 7 2 25 25 H 1.08999 * 109.63266 * 309.13824 * 14 12 10 26 26 H 1.08999 * 109.63590 * 69.73640 * 14 12 10 27 27 H 1.00897 * 111.00186 * 307.86232 * 15 14 12 28 28 H 1.09000 * 109.27330 * 67.79578 * 16 15 14 29 29 H 1.08999 * 109.26871 * 187.26882 * 16 15 14 30 30 H 1.08004 * 119.80917 * 0.18135 * 18 17 16 31 31 H 1.08001 * 120.06783 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.09089 * 179.89409 * 20 19 18 33 33 H 1.07998 * 119.82945 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 1 5.9227 -1.8534 0.8887 14 6 6.0685 -1.6493 -1.2490 15 7 7.5221 -1.8560 -1.3489 16 6 7.8133 -3.2450 -1.7174 17 6 7.1106 -4.1965 -0.7849 18 6 7.5418 -5.5143 -0.7379 19 6 6.9247 -6.4212 0.0996 20 6 5.8701 -6.0157 0.8964 21 6 5.4405 -4.7046 0.8518 22 6 6.0612 -3.7921 0.0120 23 1 -0.4850 0.8401 -0.0004 24 1 3.8649 -0.3632 0.0004 25 1 5.5788 -2.0586 -2.1327 26 1 5.8547 -0.5835 -1.1689 27 1 7.9829 -1.6065 -0.4867 28 1 7.4744 -3.4252 -2.7376 29 1 8.8885 -3.4143 -1.6610 30 1 8.3653 -5.8323 -1.3601 31 1 7.2648 -7.4457 0.1324 32 1 5.3836 -6.7228 1.5518 33 1 4.6170 -4.3876 1.4745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083643655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:35 Heat of formation + Delta-G solvation = -30.156540 kcal Electronic energy + Delta-G solvation = -17651.596669 eV Core-core repulsion = 14868.776020 eV Total energy + Delta-G solvation = -2782.820649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65118 -39.70575 -37.47321 -36.13122 -33.89940 -33.43369 -31.64460 -30.29841 -27.19564 -25.32765 -24.46553 -23.30239 -21.61854 -20.97972 -20.20737 -17.86171 -17.50259 -17.01007 -16.80590 -16.45266 -16.03232 -15.52063 -15.15524 -14.91242 -14.58949 -14.45589 -14.21940 -13.84675 -13.59055 -13.10634 -12.90007 -12.81683 -12.50667 -12.45602 -12.18058 -12.00826 -11.72211 -11.49667 -10.57712 -10.28731 -9.66579 -9.51444 -9.45379 -8.45134 -6.06640 0.40705 0.52708 1.28673 1.32943 1.42725 1.85765 2.20235 2.69605 2.95916 3.10455 3.30674 3.59014 3.86913 3.91356 4.02561 4.11814 4.24248 4.32498 4.49893 4.61898 4.66610 4.74757 4.82320 4.97277 5.14999 5.18393 5.49318 5.49950 5.63322 5.72658 5.84206 5.90039 6.14832 6.41570 6.52970 6.81758 7.32617 7.87466 8.72215 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.006821 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.792788 B = 4103.881425 C = 4791.920360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.229 1.229 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.055 0.945 9 N -0.581 5.581 10 C 0.456 3.544 11 O -0.612 6.612 12 C -0.089 4.089 13 H 0.117 0.883 14 C 0.071 3.929 15 N -0.664 5.664 16 C 0.096 3.904 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.146 4.146 21 C -0.100 4.100 22 C -0.088 4.088 23 H 0.280 0.720 24 H 0.389 0.611 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.354 0.646 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.127 0.873 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.696 -3.046 -1.160 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.210 4.210 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.152 1.152 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.073 0.927 9 N -0.222 5.222 10 C 0.244 3.756 11 O -0.497 6.497 12 C -0.112 4.112 13 H 0.135 0.865 14 C -0.060 4.060 15 N -0.291 5.291 16 C -0.034 4.034 17 C -0.121 4.121 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.164 4.164 21 C -0.119 4.119 22 C -0.088 4.088 23 H 0.090 0.910 24 H 0.225 0.775 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.173 0.827 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.145 0.855 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.153 -3.359 -1.832 20.513 hybrid contribution -1.205 0.224 1.174 1.697 sum 18.948 -3.135 -0.659 19.217 Atomic orbital electron populations 1.69801 1.08145 1.29367 1.49832 1.26104 0.96448 1.02672 0.95819 0.85441 0.79736 0.76803 0.80108 1.18047 1.15187 1.19753 1.19008 0.81342 0.94980 1.50669 0.92675 1.41989 1.05815 1.07313 1.67048 1.20510 0.90171 0.83447 0.81518 1.90551 1.71123 1.32547 1.55474 1.20848 0.91066 0.95984 1.03333 0.86483 1.22032 0.89063 1.00551 0.94330 1.61051 1.07238 1.21452 1.39389 1.21122 1.00910 0.84383 0.96937 1.20716 0.96469 0.97175 0.97757 1.21363 1.01205 0.91980 0.99678 1.21418 0.95504 1.00801 0.95870 1.21317 0.98432 0.95433 1.01182 1.21235 0.97256 0.94690 0.98705 1.19229 0.96847 0.94433 0.98320 0.91022 0.77474 0.91872 0.88261 0.82691 0.89592 0.86347 0.82631 0.83253 0.85505 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.66 0.30 -55.88 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.96 38.58 27.74 68.60 1.90 40.49 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.33 -19.48 10.16 84.04 0.85 -18.63 16 8 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 9 N -0.58 -27.70 4.99 -306.98 -1.53 -29.23 16 10 C 0.46 21.18 6.78 87.66 0.59 21.78 16 11 O -0.61 -34.46 13.25 -3.07 -0.04 -34.50 16 12 C -0.09 -2.97 2.69 -12.32 -0.03 -3.01 16 13 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 14 C 0.07 1.96 5.74 86.22 0.49 2.45 16 15 N -0.66 -14.04 6.96 -518.28 -3.61 -17.65 16 16 C 0.10 1.92 6.34 85.58 0.54 2.46 16 17 C -0.12 -3.13 5.79 -19.87 -0.12 -3.25 16 18 C -0.12 -2.78 9.65 22.33 0.22 -2.57 16 19 C -0.12 -2.84 10.05 22.22 0.22 -2.61 16 20 C -0.15 -4.43 10.05 22.23 0.22 -4.21 16 21 C -0.10 -3.74 8.09 22.33 0.18 -3.56 16 22 C -0.09 -2.94 5.27 -19.85 -0.10 -3.05 16 23 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 24 H 0.39 15.40 5.39 -92.71 -0.50 14.90 16 25 H 0.06 2.01 8.02 -2.39 -0.02 1.99 16 26 H 0.10 2.46 7.85 -2.39 -0.02 2.44 16 27 H 0.35 6.23 8.74 -89.70 -0.78 5.44 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.12 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.09 4.12 6.54 -2.91 -0.02 4.10 16 Total: -1.00 -75.52 274.56 0.37 -75.16 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.20 Total: 35.97 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 3.54 Total: -14.35 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -4.84 Total: -102.75 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.04 Total: -34.50 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.49 kcal Total: -75.52 0.37 -75.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083643655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.999 kcal (2) G-P(sol) polarization free energy of solvation -75.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds