Wall clock time and date at job start Mon Mar 30 2020 03:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47059 * 179.97438 * 3 2 1 5 5 S 1.81404 * 109.46940 * 179.97438 * 4 3 2 6 6 O 1.42104 * 108.57434 * 65.51580 * 5 4 3 7 7 O 1.42092 * 108.58185 * 294.49032 * 5 4 3 8 8 C 1.81402 * 101.91963 * 179.97438 * 5 4 3 9 9 C 1.53002 * 109.46938 * 185.05637 * 8 5 4 10 10 C 1.50699 * 115.55285 * 297.01765 * 9 8 5 11 11 H 1.07994 * 120.00085 * 95.18879 * 10 9 8 12 12 C 1.37879 * 119.99667 * 274.91237 * 10 9 8 13 13 N 1.31512 * 120.00172 * 355.59791 * 12 10 9 14 14 Si 1.86801 * 119.99588 * 175.60013 * 12 10 9 15 15 H 1.48499 * 109.47104 * 90.00250 * 14 12 10 16 16 H 1.48502 * 109.46649 * 209.99637 * 14 12 10 17 17 H 1.48489 * 109.47390 * 329.99718 * 14 12 10 18 18 C 1.53003 * 117.49359 * 82.68779 * 9 8 5 19 19 C 1.52996 * 117.49534 * 151.34194 * 9 8 5 20 20 H 1.09005 * 109.46976 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47007 * 299.99345 * 1 2 3 22 22 H 1.08994 * 109.47448 * 59.99741 * 1 2 3 23 23 H 1.09004 * 109.47007 * 240.00654 * 2 1 3 24 24 H 1.08994 * 109.47448 * 120.00259 * 2 1 3 25 25 H 1.09004 * 109.46677 * 60.00452 * 3 2 1 26 26 H 1.08994 * 109.47202 * 300.00410 * 3 2 1 27 27 H 1.09004 * 109.47007 * 60.00654 * 4 3 2 28 28 H 1.08994 * 109.47448 * 300.00259 * 4 3 2 29 29 H 1.09000 * 109.46860 * 65.06249 * 8 5 4 30 30 H 1.08993 * 109.47621 * 305.06069 * 8 5 4 31 31 H 0.97001 * 120.00300 * 185.00582 * 13 12 10 32 32 H 1.09001 * 117.49495 * 214.99927 * 18 9 8 33 33 H 1.09004 * 117.50353 * 0.02562 * 18 9 8 34 34 H 1.09006 * 117.50375 * 359.97438 * 19 9 8 35 35 H 1.09005 * 117.49836 * 144.97669 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1746 3.1528 -0.0001 6 8 3.7986 3.7664 1.2253 7 8 3.7997 3.7651 -1.2263 8 6 5.9729 2.9145 0.0016 9 6 6.6671 4.2720 0.1283 10 6 6.4268 5.2335 -1.0070 11 1 5.6451 5.9747 -0.9306 12 6 7.2088 5.1706 -2.1408 13 7 8.2190 4.3305 -2.1972 14 14 6.8332 6.2788 -3.5970 15 1 7.5798 7.5544 -3.4538 16 1 7.2454 5.6023 -4.8530 17 1 5.3759 6.5605 -3.6417 18 6 6.8170 4.8604 1.5327 19 6 8.0407 4.3029 0.8015 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8901 26 1 1.6766 1.9563 -0.8899 27 1 3.9337 0.9286 -0.8892 28 1 3.9330 0.9288 0.8908 29 1 6.2769 2.4365 -0.9297 30 1 6.2549 2.2822 0.8434 31 1 8.8128 4.3367 -2.9642 32 1 6.7418 5.9429 1.6354 33 1 6.4214 4.2802 2.3664 34 1 8.4497 3.3561 1.1545 35 1 8.7708 5.0184 0.4229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:21 Heat of formation + Delta-G solvation = -89.227862 kcal Electronic energy + Delta-G solvation = -16524.136421 eV Core-core repulsion = 13841.905448 eV Total energy + Delta-G solvation = -2682.230973 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.52359 -37.68527 -36.85891 -36.49423 -34.04776 -31.39496 -29.86604 -27.49615 -25.16201 -22.93058 -22.18486 -21.20454 -19.59752 -18.29762 -17.32866 -17.15194 -16.70598 -16.43689 -16.13352 -15.51423 -14.91282 -14.71522 -14.25075 -13.76250 -13.72435 -13.60425 -13.07319 -12.84204 -12.79609 -12.74067 -12.56179 -12.43666 -12.40074 -12.18292 -12.10897 -11.80865 -11.52601 -11.52109 -11.09551 -10.93278 -10.47138 -9.84347 -8.16390 -6.30513 -0.70866 1.36040 1.39228 1.52509 2.19682 2.41170 2.94204 3.10317 3.32439 3.45017 3.68731 3.87057 4.05589 4.11184 4.26897 4.42090 4.56403 4.57294 4.61639 4.62809 4.76735 4.88893 4.91125 5.01131 5.01671 5.20165 5.25482 5.30640 5.44508 5.49821 5.65374 5.74668 6.27005 6.75036 7.40932 8.89816 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.007223 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.436921 B = 3875.309433 C = 4403.601906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C -0.125 4.125 4 C -0.597 4.597 5 S 2.410 3.590 6 O -0.982 6.982 7 O -0.980 6.980 8 C -0.547 4.547 9 C 0.007 3.993 10 C -0.522 4.522 11 H 0.043 0.957 12 C 0.040 3.960 13 N -0.896 5.896 14 Si 0.932 3.068 15 H -0.270 1.270 16 H -0.273 1.273 17 H -0.278 1.278 18 C -0.195 4.195 19 C -0.135 4.135 20 H 0.070 0.930 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.123 0.877 30 H 0.140 0.860 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -11.249 4.808 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.153 4.153 3 C -0.163 4.163 4 C -0.729 4.729 5 S 2.600 3.400 6 O -0.979 6.979 7 O -0.978 6.978 8 C -0.677 4.677 9 C 0.005 3.995 10 C -0.560 4.560 11 H 0.061 0.939 12 C -0.162 4.162 13 N -0.533 5.533 14 Si 0.758 3.242 15 H -0.195 1.195 16 H -0.198 1.198 17 H -0.203 1.203 18 C -0.232 4.232 19 C -0.174 4.174 20 H 0.089 0.911 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.170 0.830 28 H 0.180 0.820 29 H 0.141 0.859 30 H 0.158 0.842 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.023 -10.540 4.645 14.632 hybrid contribution 0.632 0.252 -0.998 1.208 sum -8.392 -10.287 3.646 13.768 Atomic orbital electron populations 1.21848 0.95085 1.02634 1.02093 1.21519 0.96462 0.93831 1.03528 1.21527 0.90330 1.01029 1.03456 1.30259 1.06663 1.21998 1.13959 1.08000 0.78733 0.79414 0.73895 1.93440 1.82434 1.75396 1.46666 1.93481 1.82244 1.75178 1.46861 1.29687 1.21984 1.05563 1.10514 1.18450 0.98470 0.91307 0.91256 1.20672 1.18059 1.16986 1.00282 0.93863 1.25478 0.94693 0.96239 0.99799 1.70040 1.15476 1.36672 1.31068 0.85936 0.78575 0.79650 0.80046 1.19534 1.19803 1.20329 1.23186 1.04198 1.00120 0.95716 1.22460 0.91128 1.00915 1.02856 0.91120 0.92458 0.92866 0.90827 0.90233 0.90522 0.91258 0.83008 0.81967 0.85905 0.84220 0.92668 0.90681 0.88152 0.89331 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.11 -1.94 5.93 30.60 0.18 -1.76 16 3 C -0.12 -2.87 5.22 30.60 0.16 -2.71 16 4 C -0.60 -13.89 5.81 71.98 0.42 -13.47 16 5 S 2.41 90.66 4.52 -56.49 -0.26 90.41 16 6 O -0.98 -41.38 18.08 -127.37 -2.30 -43.68 16 7 O -0.98 -46.65 17.29 -127.37 -2.20 -48.85 16 8 C -0.55 -21.45 5.67 71.98 0.41 -21.04 16 9 C 0.01 0.33 1.43 -52.93 -0.08 0.25 16 10 C -0.52 -29.70 7.74 25.60 0.20 -29.50 16 11 H 0.04 2.59 7.82 -2.91 -0.02 2.57 16 12 C 0.04 2.24 5.43 84.66 0.46 2.70 16 13 N -0.90 -50.09 12.65 21.45 0.27 -49.82 16 14 Si 0.93 45.28 29.54 68.60 2.03 47.31 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 17 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 18 C -0.20 -8.57 9.96 30.62 0.30 -8.27 16 19 C -0.13 -6.15 9.15 30.62 0.28 -5.87 16 20 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.15 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.12 4.95 8.14 -2.39 -0.02 4.93 16 30 H 0.14 4.16 8.10 -2.39 -0.02 4.14 16 31 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 32 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.09 3.54 8.14 -2.38 -0.02 3.52 16 35 H 0.06 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -72.31 307.90 1.62 -70.69 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.04 Total: 15.36 kcal Atomic # 6 Polarization: -84.46 SS G_CDS: 3.05 Total: -81.41 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.27 Total: -49.82 kcal Atomic # 8 Polarization: -88.02 SS G_CDS: -4.51 Total: -92.53 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 90.66 SS G_CDS: -0.26 Total: 90.41 kcal Total: -72.31 1.62 -70.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.540 kcal (2) G-P(sol) polarization free energy of solvation -72.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds